Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3060 125 2e-23 seq2521 89.7 1e-12 >seq3060 Length=205498 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| || ||||||||||| || |||||||| || | || || | || || Sbjct 122865 AGGACGAGATGCAGTGTAGACTCTTTCTGAATGTTGTAGTCTGATAGCGTGCGACCGTCC 122806 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||| || || | | ||||||||| | | ||||| ||||| ||| Sbjct 122805 TCGAGCTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCT 122746 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || |||||| | || | |||||||| |||||||||||| || || ||| Sbjct 122745 TGAATCTTAGTTTTGACGTTGTCGATTGTGTCTGAAGACTCTACTTCAAGCGTGATTGTT 122686 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | |||||||| || | |||||| Sbjct 122685 TTTCCGGTCAAGGTCTTCACAAAAATCTGCAT 122654 Score = 114 bits (126), Expect = 3e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||||||||| |||||||| || ||||||||||| ||||| | | ||| | Sbjct 122644 GAGACGGAGGACAAGATGGAGAGTAGATTCCTTTTGGATGTTATAATCAGAGAGAGTGCG 122585 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 ||||| || || ||| || ||||| || |||| | ||||| || | | ||| || | Sbjct 122584 ACCATCCTCAAGTTGTTTGCCAGCGAAAATCAAGCGT-TGCTGATCTGGAGGGATGCCCT 122526 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| || ||||| || ||| || | || | | | || || || || || |||| Sbjct 122525 CCTTATCCTGAATCTTGGTTTTCACGTTATCGATGGTATCGGAGGATTCAACCTCGAGAG 122466 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | ||||| || |||||||||||||| |||| Sbjct 122465 TGATAGTCTTTCCCGTGAGAGTCTTGACGA 122436 Score = 100 bits (110), Expect = 7e-16 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || || |||||||||||||| | | ||| | |||||||| | Sbjct 122340 CAAG-TGAAGGGTAGATTCCTTCTGGATGTTGTAATCCGAAAGAGTACGGCCATCTTCAA 122282 Query 151957 GGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | ||| || |||||||| |||| | |||||||| | | |||||| ||||| ||||| Sbjct 122281 GCTGTTTACCAGCGAAGATCAAGCGT-TGCTGGTCAGGAGGGATTCCCTCCTTGTCTTGG 122223 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || ||| || ||| | || | | || ||| || ||||| || || || ||| Sbjct 122222 ATCTTTGTCTTCACATTGTCGATAGTATCACCGGACTCAACCTCAAGGGTGATGGTCTTG 122163 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | |||||| || || | |||||| Sbjct 122162 CCAGTCAAAGTCTTGACAAAAATCTGCAT 122134 >seq2521 Length=135005 Score = 89.7 bits (98), Expect = 1e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||| || |||||| | || | | |||||||| ||| || || ||||| |||| Sbjct 57807 CTTGAATCTTGCTCTTGACATTGTCGATGGTGTCTGAAGACTCCACCTCGAGAGTGATAG 57866 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | ||||||||||| ||||||||||||| ||||||||| Sbjct 57867 TCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATTTT 57903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153749086071021