Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3060 181 2e-40 seq2521 105 1e-17 seq4416 95.1 3e-14 seq2400 93.3 9e-14 >seq3060 Length=205498 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || | |||||| || ||||| | || ||||| || ||||||||||| | Sbjct 122881 ACCACCGCGTAAGCGAAGGACGAGATGCAGTGTAGACTCTTTCTGAATGTTGTAGTCTGA 122822 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||| || ||||| || ||||| |||||||| |||||||| || ||||| || Sbjct 122821 TAGCGTGCGACCGTCCTCGAGCTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCTGGTGG 122762 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||||||||| ||||| | ||| ||| | ||||| ||||| |||| || || Sbjct 122761 AATTCCCTCCTTGTCTTGAATCTTAGTTTTGACGTTGTCGATTGTGTCTGAAGACTCTAC 122702 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || ||||| || || || ||||| ||||| || || |||||||| Sbjct 122701 TTCAAGCGTGATTGTTTTTCCGGTCAAGGTCTTCACAAAAATCTGCAT 122654 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| || | || ||| || ||||||||||| || | Sbjct 122361 ACCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCCGA 122302 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || |||||||| || || ||||| || || |||||||| ||||| |||||| || Sbjct 122301 AAGAGTACGGCCATCTTCAAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGGTCAGGAGG 122242 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||||||||||||||||| || || | |||||||| || | || || Sbjct 122241 GATTCCCTCCTTGTCTTGGATCTTTGTCTTCACATTGTCGATAGTATCACCGGACTCAAC 122182 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || ||||||||||| || || |||||||| Sbjct 122181 CTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAAATCTGCAT 122134 Score = 159 bits (176), Expect = 7e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || || ||||| | || ||| ||||||||||| || |||| Sbjct 122653 ACCACCTCGGAGACGGAGGACAAGATGGAGAGTAGATTCCTTTTGGATGTTATAATCAGA 122594 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| |||||||| || || || ||||| ||||| || || || Sbjct 122593 GAGAGTGCGACCATCCTCAAGTTGTTTGCCAGCGAAAATCAAGCGTTGCTGATCTGGAGG 122534 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| || || ||||| | ||| ||| ||||||| || || || | ||| || Sbjct 122533 GATGCCCTCCTTATCCTGAATCTTGGTTTTCACGTTATCGATGGTATCGGAGGATTCAAC 122474 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 ||||||||||| ||||| ||||| | |||||| |||| Sbjct 122473 CTCGAGAGTGATAGTCTTTCCCGTGAGAGTCTTGACGA 122436 >seq2521 Length=135005 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || || | ||| ||||| |||||||||||||| | Sbjct 57571 ACCACCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGA 57630 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || ||||| ||||| | |||||| |||||| || Sbjct 57631 GAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCAGGAGG 57690 Query 282992 AATACCCTCCTTGTCT 283007 ||| || ||||||||| Sbjct 57691 AATGCCTTCCTTGTCT 57706 >seq4416 Length=140045 Score = 95.1 bits (104), Expect = 3e-14 Identities = 263/393 (67%), Gaps = 8/393 (2%) Strand=Plus/Minus Query 274431 ACGATGGGCGTGATAAATTTCTTCAGGAAACCTGGAATTTCTAGCAGACTGGGGAAA-CA 274489 ||||| ||||| || |||| |||| || || || || || | |||||| || | Sbjct 48883 ACGATTGGCGTAATGAATTCAATCAGAAACCCCGGTATCCTAAGTAAACTGGGAAAGGCC 48824 Query 274490 ACTATGGAAAAAGTTCATGACAAGACCTGATATGTGAGTTCCGTCAACGTCGGCATCTGT 274549 ||| || | | |||| || | |||||| |||||| | |||||| ||| ||| || Sbjct 48823 ACT-TGAAGATAGTTGATTAGTAGACCTTTAATGTGACTGCCGTCATGGTCCTGATCAGT 48765 Query 274550 CATGATCATAACATGTCCATACCGAA-GCGAGGAAGTATCTTTATACAACTTC-CCTGTT 274607 ||||||||| | ||| ||||| |||| || | | ||| ||| ||||| |||| |||| Sbjct 48764 CATGATCATGAGATGACCATAACGAAGGCCACG-AGTGTCTGTATACTCCTTCTTATGTT 48706 Query 274608 TGAAGCCCAAGAATTTGCTTGAGAGCGGTG-ATTTCTTCGTTCTTTGTGATACTCGCCAC 274666 | ||| | ||| || |||| | || || || | |||||| | || | || Sbjct 48705 GTAGGCCGAGGAAATT-TTTGA-TGTTTTGAATCTCCTGGTTCTTGGAAATTTGGTCAAC 48648 Query 274667 AGAAGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCCATACCTTTCGCG 274726 ||||||||||| || || |||| ||| || || | |||||||||||| | ||| | Sbjct 48647 GGAAGCATCACGGACATTGAGCAGCTTTCCTCGCAATGGGAAAACGCCAAAGAGATCGGG 48588 Query 274727 CCCGATGACCGAAAGACCGGCGATCGCGAGAGTTGCTGCTGAATCTCCCTCTGTGAGAAT 274786 || | || || || || || || ||| | || ||||| || || |||||||| Sbjct 48587 TCCAACTACAGATCTGCCCGCCATTGCAAGACCTTTGGCGGAATCCCCTTCGGTGAGAAT 48528 Query 274787 CAAAGTACACAACTTACTGTTTTTTGTGCCTGC 274819 || || || | || | |||||| ||||| Sbjct 48527 CAGCGTGCAGTGATAACCTTCTTTTGTCCCTGC 48495 >seq2400 Length=3404 Score = 93.3 bits (102), Expect = 9e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 301432 GACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTC 301491 ||||| || |||||||| || ||||| |||||| ||| || || || || |||||| Sbjct 1263 GACCCGTACATCAACGTGGACCCGGGCACGATGTCGCCGTTCCAGCACGGCGAGGTGTTC 1322 Query 301492 GTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTC 301545 |||||||| || || || || || || ||||| |||||||||||||| || ||| Sbjct 1323 GTGACGGACGACGGCGCGGAGACGGACCTGGACCTGGGGCACTACGAGCGCTTC 1376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046674141560554