Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3060 170 5e-37 seq2521 93.3 1e-13 >seq3060 Length=205498 Score = 170 bits (188), Expect = 5e-37 Identities = 157/199 (79%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || |||||||| ||||| || ||||| |||||||| ||| ||| || ||||||| Sbjct 122436 TCGTCAAGACTCTCACGGGAAAGACTATCACTCTCGAGGTTGAATCCTCCGATACCATCG 122495 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | ||||| ||| ||||||||||| || || || |||||||| || |||||||| | | Sbjct 122496 ATAACGTGAAAACCAAGATTCAGGATAAGGAGGGCATCCCTCCAGATCAGCAACGCTTGA 122555 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 | ||||| || ||||| || || ||||| | ||||| | ||||||||| ||||||| | Sbjct 122556 TTTTCGCTGGCAAACAACTTGAGGATGGTCGCACTCTCTCTGATTATAACATCCAAAAGG 122615 Query 178111 AATCAACACTGCATCTTGT 178129 |||| || || |||||||| Sbjct 122616 AATCTACTCTCCATCTTGT 122634 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || ||| | || || || || |||||||| ||||| || | || Sbjct 122137 CAGATTTTTGTCAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCCGGTGAT 122196 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || |||||| || ||||| || ||||||||||| ||||||||| Sbjct 122197 ACTATCGACAATGTGAAGACAAAGATCCAAGACAAGGAGGGAATCCCTCCTGACCAGCAA 122256 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || |||||||| |||||||| | |||||| | ||||| ||| || Sbjct 122257 CGCTTGATCTTCGCTGGTAAACAGCTTGAAGATGGCCGTACTCTTTCGGATTACAACATC 122316 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || ||||| || || || |||| || Sbjct 122317 CAGAAGGAATCTACCCTTCA-CTTGGTT 122343 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || | || |||||||| ||||| || || || || |||||| Sbjct 122657 CAGATTTTTGTGAAGACCTTGACCGGAAAAACAATCACGCTTGAAGTAGAGTCTTCAGAC 122716 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||||||| |||||||| ||||| || ||||| || || |||||||| Sbjct 122717 ACAATCGACAACGTCAAAACTAAGATTCAAGACAAGGAGGGAATTCCACCAGACCAGCAG 122776 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| ||||||||||| || || | || || | || || ||| | Sbjct 122777 CGTTTGATTTTTGCCGGCAAACAGCTCGAGGACGGTCGCACGCTATCAGACTACAACATT 122836 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || ||||||||||| || Sbjct 122837 CAGAAAGAGTCTACACTGCATCTCGT 122862 Score = 140 bits (154), Expect = 8e-28 Identities = 161/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || | || || || || || || | ||||| || |||||| Sbjct 122885 CAAATTTTTGTTAAGACATTAACCGGCAAGACTATTACATTGGAGGTCGAGTCGTCAGAC 122944 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || ||||| ||||| || || ||| ||||| || |||||||| ||||| || ||||| || Sbjct 122945 ACGATCGACAACGTTAAGACGAAA-ATTCAAGATAAAGAAGGTATCCCACCCGACCAACA 123003 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 ||||| ||||| || ||||| ||||| || ||||| |||| || ||||||||||| | Sbjct 123004 GCGACTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGGACACTCTCCGATTATAACAT 123063 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 ||| || ||| || |||||| | || |||||| Sbjct 123064 CCAGAAGGAAAGCACTCTGCATTTGGTATTGAGA 123097 >seq2521 Length=135005 Score = 93.3 bits (102), Expect = 1e-13 Identities = 94/121 (78%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 178009 TTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGC 178068 ||||| |||| ||||| || ||||| ||||||||||| || ||||||||||| || |||| Sbjct 57709 TTCAG-ACAAGGAAGGCATTCCTCCTGACCAGCAACGTCTCATCTTCGCCGGCAAGCAGC 57651 Query 178069 TCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| | || || | || || ||| |||| ||||| || || || || || | Sbjct 57650 TCGAGGATGGCCGTACCCTCTCGGACTACAACATCCAGAAAGAGTCCACCCTTCACCTCG 57591 Query 178129 T 178129 | Sbjct 57590 T 57590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203656383968094