Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3060 129 5e-25 seq2521 98.7 9e-16 seq4836 87.8 2e-12 >seq3060 Length=205498 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||||| || | || |||||||| || ||| ||||||||||| ||||| || Sbjct 122880 CCACCGCGTAAGCGAAGGACGAGATGCAGTGTAGACTCTTTCTGAATGTTGTAGTCTGAT 122821 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||| |||||||| || |||| ||||| ||||| | ||| Sbjct 122820 AGCGTGCGACCGTCCTCGAGCTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCTGGTGGA 122761 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||| | ||| | || | || ||| | | | ||||| ||||| || Sbjct 122760 ATTCCCTCCTTGT-CTTGAATCTTAGTTTTGACGTTGTCGATTGTGTCTGAAGACTCTAC 122702 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| || ||||| || |||| ||||| || ||||||||||| Sbjct 122701 TTCAAGCGTGATTGTTTTTCCGGTCAAGGTCTTCACAAAAATCTGCAT 122654 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| | | || |||| |||||| ||||| |||||||| |||||||| ||||| Sbjct 123109 GCCGCCGCGCAATCTCAATACCAAATGCAGAGTGCTTTCCTTCTGGATGTTATAATCGGA 123050 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || || | || || |||||||| || || || || || ||||||||||| | || Sbjct 123049 GAGTGTCCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCGGGTGG 122990 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | || ||| | ||| |||| | | |||| | | | ||||| |||||| | Sbjct 122989 GATAC-CTTCTTTATCTTGAATTTTCGTCTTAACGTTGTCGATCGTGTCTGACGACTCGA 122931 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || || | ||||| || ||||| ||||| Sbjct 122930 CCTCCAATGTAATAGTCTTGCCGGTTAATGTCTTAACAAAAATTTGCAT 122882 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||| ||||| || || || || || || | || || ||||| || || ||||| Sbjct 122324 TCCTTCTGGATGTTGTAATCCGAAAGAGTACGGCCATCTTCAAGCTGTTTACCAGCGAAG 122265 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 |||| ||| || ||||| | || | | ||||||||| ||| ||| ||||| | Sbjct 122264 ATCAAGCGTTGCTGGTCAGGAGGGATTCCCTCCTTGTCTTGGATCTTTGTCTTCA-CATT 122206 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | | ||| || | ||||| ||||| | || || || || || |||| ||||| || Sbjct 122205 GTCGATAGTATCACCGGACTCAACCTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGAC 122146 Query 41851 GAAAATCTGCATGTTATCGATGGA 41874 ||||||||||| | ||||||| Sbjct 122145 AAAAATCTGCATCGTGGCGATGGA 122122 >seq2521 Length=135005 Score = 98.7 bits (108), Expect = 9e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || ||||| | || || || || ||| ||| ||||| ||||| ||||| Sbjct 57569 CCACCACCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCC 57628 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 |||||||| || | || |||||||||||||||||||| || || || || ||||| | Sbjct 57629 GAGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCAGGA 57688 Query 41753 GGAACGCTCTCCTTGTC 41769 |||| || |||||||| Sbjct 57689 GGAATGCCTTCCTTGTC 57705 >seq4836 Length=199183 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 |||| || || || || ||| | || || |||| ||||||||||| || ||||| | Sbjct 162949 CCTTTTGGATATTGTAATCGCTCAAAGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAAA 162890 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 ||| ||||| ||||| | |||| || ||||||||| |||||| |||| || | Sbjct 162889 TCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATTTTGCTCTTC-ACATTG 162831 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | |||||||| |||||||| || | || || || || || || || ||||| ||| Sbjct 162830 TCGATCGTGTCGCTGGACTCCACTTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACG 162771 Query 41852 AA 41853 || Sbjct 162770 AA 162769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462275967041200