Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq481 107 4e-18
>seq481
Length=22500
Score = 107 bits (118), Expect = 4e-18
Identities = 295/444 (66%), Gaps = 16/444 (4%)
Strand=Plus/Minus
Query 230202 TGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCG-CCATCTTTTGGCTGCGGAACAAAG 230260
|||||| ||||| | || ||||| ||| ||| ||||||||||| || ||| |
Sbjct 2285 TGTTGAGGGTATCTTCTTCTCCGGTTCATTC-GCGTCCATCTTTTGGTTGAAGAAGCGTG 2227
Query 230261 GTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATC 230320
|| ||||| | || || | | || || ||| ||||| || || |||||||| || |
Sbjct 2226 GTCTGATGGCCGGGCTTACTTTCTCCAATGAGCTCATCTCCCGTGATGAGGGTCTTCA-C 2168
Query 230321 AAC-AGTTCGGCGAGCTTATGTATTCA------AAGCTCCAGAACAAGCTACCATTCGAG 230373
| | | |||| ||| | | ||| |||| || | ||||| | || ||
Sbjct 2167 ACCGACTTCGCATGCCTTCTTTTTTCCCACTTGAAGCACC-GCCCAAGCAAGCA----AG 2113
Query 230374 ACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCT 230433
|| || || | |||| || || || || || || | || ||| | ||| |||
Sbjct 2112 CCG-TCCAAGATGTCATCACTGAGGCCGTCACAATTGAGCAAGAATTCTTGACTGAGGCT 2054
Query 230434 ATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTA 230493
|||| ||| ||| | ||||||||| | | || ||| || |||||||| |||||
Sbjct 2053 CTTCCTTGTGCTCTTCTCGGCATGAACTCAAATCTGATGAAGCAATACATCGAGTTCGTT 1994
Query 230494 GCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTT 230553
|| || || | || | || ||||| | |||||||| ||||| || ||||| ||
Sbjct 1993 GCTGATCGTCTCCTTCTCGCCCTTGGCAATGAGAAAGTCTACAAGGTTACCAACCCATTC 1934
Query 230554 GCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGT 230613
| || |||||| ||| || || || ||||||||||||||||| |||||||| ||
Sbjct 1933 GACTTCATGGAGAACATCTCTCTCGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTTGGT 1874
Query 230614 GACTATCAGAGGCCTGGTGTGATG 230637
||||| || | | ||||| |||
Sbjct 1873 GACTACCAAAAAGCCGGTGTCATG 1850
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057778311589730
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |