Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq481 107 4e-18 >seq481 Length=22500 Score = 107 bits (118), Expect = 4e-18 Identities = 295/444 (66%), Gaps = 16/444 (4%) Strand=Plus/Minus Query 230202 TGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCG-CCATCTTTTGGCTGCGGAACAAAG 230260 |||||| ||||| | || ||||| ||| ||| ||||||||||| || ||| | Sbjct 2285 TGTTGAGGGTATCTTCTTCTCCGGTTCATTC-GCGTCCATCTTTTGGTTGAAGAAGCGTG 2227 Query 230261 GTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATC 230320 || ||||| | || || | | || || ||| ||||| || || |||||||| || | Sbjct 2226 GTCTGATGGCCGGGCTTACTTTCTCCAATGAGCTCATCTCCCGTGATGAGGGTCTTCA-C 2168 Query 230321 AAC-AGTTCGGCGAGCTTATGTATTCA------AAGCTCCAGAACAAGCTACCATTCGAG 230373 | | | |||| ||| | | ||| |||| || | ||||| | || || Sbjct 2167 ACCGACTTCGCATGCCTTCTTTTTTCCCACTTGAAGCACC-GCCCAAGCAAGCA----AG 2113 Query 230374 ACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCT 230433 || || || | |||| || || || || || || | || ||| | ||| ||| Sbjct 2112 CCG-TCCAAGATGTCATCACTGAGGCCGTCACAATTGAGCAAGAATTCTTGACTGAGGCT 2054 Query 230434 ATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTA 230493 |||| ||| ||| | ||||||||| | | || ||| || |||||||| ||||| Sbjct 2053 CTTCCTTGTGCTCTTCTCGGCATGAACTCAAATCTGATGAAGCAATACATCGAGTTCGTT 1994 Query 230494 GCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTT 230553 || || || | || | || ||||| | |||||||| ||||| || ||||| || Sbjct 1993 GCTGATCGTCTCCTTCTCGCCCTTGGCAATGAGAAAGTCTACAAGGTTACCAACCCATTC 1934 Query 230554 GCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGT 230613 | || |||||| ||| || || || ||||||||||||||||| |||||||| || Sbjct 1933 GACTTCATGGAGAACATCTCTCTCGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTTGGT 1874 Query 230614 GACTATCAGAGGCCTGGTGTGATG 230637 ||||| || | | ||||| ||| Sbjct 1873 GACTACCAAAAAGCCGGTGTCATG 1850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057778311589730