Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq481 165 1e-35
>seq481
Length=22500
Score = 165 bits (182), Expect = 1e-35
Identities = 354/523 (68%), Gaps = 11/523 (2%)
Strand=Plus/Plus
Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902
||||||||| ||||| ||||| || ||||| || || || || || | | || || ||
Sbjct 1862 TTTTTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTT 1921
Query 23903 TTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGA-AA 23961
|||||||| ||| |||| |||||||| || |||| | || | | | |||| || ||
Sbjct 1922 CTCCATGAAGTCGAATGGGTTGGTAACCTTGTAGACT-TTCTCATTGCCAAGGGCGAGAA 1980
Query 23962 TCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAA 24021
| | ||| || || ||||| || ||| ||||||| | | ||||| || | ||
Sbjct 1981 GGAGACGATCAGCAACGAACTCGATGTATTGCTTCATCAGATTTGAGTTCATGCCGAGAA 2040
Query 24022 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 24081
| | ||||||||| |||| | |||||||| ||||| | ||| || || || || |
Sbjct 2041 GAGCACAAGGAAGAGCCTCAGTCAAGAATTCTTGCTCAATTGTGACGGCCTCAGTGATGA 2100
Query 24082 TAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 24139
| |||| || | || | || || | | | || || ||| | | |||||
Sbjct 2101 CA--TCTTGGACGGCTTGCTTGCTTGGGCGGTGCTTCAAGTGGGAAAAAAGAAGGCATGC 2158
Query 24140 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 24199
||| ||| ||| |||||||| || | || | || ||||| || || || ||||
Sbjct 2159 GAAGTCGGTGTGAAGACCCTCATCACGGGAGATGAGCTCATTGGAGAAAGTAAGCCCGGC 2218
Query 24200 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 24259
||| || |||||||| || | |||||| |||||||| ||||| || || ||||| || ||
Sbjct 2219 CATCAGACCACGCTTCTTCAACCAAAAGATGGACGCGAATGAACCGGAGAAGAAGATACC 2278
Query 24260 TTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCA----TAACCGGCGCTGTCATGTATCC 24315
|| || || || || |||| ||| | || || || | | |||| || ||||
Sbjct 2279 CTCAACAGCTGCGAATGCAACAAGACGTTGAGCAAAGGTAGACTTCT-TGTCTTGAATCC 2337
Query 24316 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 24358
| | |||||| ||||||||||| || | ||||| | |||
Sbjct 2338 ATCTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGGAACTGT 2380
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593696582056080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |