Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq481 165 1e-35 >seq481 Length=22500 Score = 165 bits (182), Expect = 1e-35 Identities = 354/523 (68%), Gaps = 11/523 (2%) Strand=Plus/Plus Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902 ||||||||| ||||| ||||| || ||||| || || || || || | | || || || Sbjct 1862 TTTTTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTT 1921 Query 23903 TTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGA-AA 23961 |||||||| ||| |||| |||||||| || |||| | || | | | |||| || || Sbjct 1922 CTCCATGAAGTCGAATGGGTTGGTAACCTTGTAGACT-TTCTCATTGCCAAGGGCGAGAA 1980 Query 23962 TCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAA 24021 | | ||| || || ||||| || ||| ||||||| | | ||||| || | || Sbjct 1981 GGAGACGATCAGCAACGAACTCGATGTATTGCTTCATCAGATTTGAGTTCATGCCGAGAA 2040 Query 24022 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 24081 | | ||||||||| |||| | |||||||| ||||| | ||| || || || || | Sbjct 2041 GAGCACAAGGAAGAGCCTCAGTCAAGAATTCTTGCTCAATTGTGACGGCCTCAGTGATGA 2100 Query 24082 TAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 24139 | |||| || | || | || || | | | || || ||| | | ||||| Sbjct 2101 CA--TCTTGGACGGCTTGCTTGCTTGGGCGGTGCTTCAAGTGGGAAAAAAGAAGGCATGC 2158 Query 24140 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 24199 ||| ||| ||| |||||||| || | || | || ||||| || || || |||| Sbjct 2159 GAAGTCGGTGTGAAGACCCTCATCACGGGAGATGAGCTCATTGGAGAAAGTAAGCCCGGC 2218 Query 24200 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 24259 ||| || |||||||| || | |||||| |||||||| ||||| || || ||||| || || Sbjct 2219 CATCAGACCACGCTTCTTCAACCAAAAGATGGACGCGAATGAACCGGAGAAGAAGATACC 2278 Query 24260 TTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCA----TAACCGGCGCTGTCATGTATCC 24315 || || || || || |||| ||| | || || || | | |||| || |||| Sbjct 2279 CTCAACAGCTGCGAATGCAACAAGACGTTGAGCAAAGGTAGACTTCT-TGTCTTGAATCC 2337 Query 24316 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 24358 | | |||||| ||||||||||| || | ||||| | ||| Sbjct 2338 ATCTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGGAACTGT 2380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593696582056080