Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq332 98.7 8e-16 seq507 91.5 1e-13 >seq332 Length=18159 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| || | ||| ||||||||||| ||||| ||||| | || ||| || | ||| Sbjct 2031 AGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCC 2090 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || || || |||||| |||| || | |||||| ||| ||| | ||| ||||| || Sbjct 2091 TCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCT 2150 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| || || | | ||| ||||| || ||| ||| | || || ||| Sbjct 2151 TGAATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCAACTTCAAGAGTGATAGTC 2210 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || ||||| || || ||||| Sbjct 2211 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | ||||||||||| || ||||||||||| | Sbjct 2244 CCACCACGGAGACGGAGAACGAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAG 2303 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| || || ||||| || |||| | | |||||||| || Sbjct 2304 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGGA 2363 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| || || | | ||| ||||| | || ||| Sbjct 2364 ATGCCCTCCTTGTCCTGAATCTTGGACTTAACATTGTCGATGGTATCGCTGGACTCAACC 2423 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGAC 21163 || | ||| |||||||||||||| | || ||||| Sbjct 2424 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 2458 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| || | ||| ||||||||||| ||||| || || || || || | ||| Sbjct 1803 AGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCTCAACGTACGGCCATCC 1862 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || |||| ||||||||| || | || ||||| || Sbjct 1863 TCCAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGGGATTCCCTCCTTATCC 1922 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | | || || || ||| ||||| ||||| ||| Sbjct 1923 TGAATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGTC 1982 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || || || ||||| |||||||| Sbjct 1983 TTGCCCGTCAAAGTCTTAACAAAGATTTGCAT 2014 >seq507 Length=44608 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||||||||||| || ||||| ||||| | Sbjct 34502 CCACCGCGAAGGCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 34561 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| || || ||||| || | || || | |||||||||| ||| Sbjct 34562 AGAGTACGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 34621 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | ||| || || | || |||| Sbjct 34622 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCCACC 34681 Query 21129 TCCACGGTAATGGTCTTGCCGGTTA 21153 || | ||| || |||||||| |||| Sbjct 34682 TCAAGGGTGATCGTCTTGCCCGTTA 34706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422241851876636