Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq481 152 5e-32
seq332 125 7e-24
seq507 120 3e-22
seq1884 93.3 4e-14
>seq481
Length=22500
Score = 152 bits (168), Expect = 5e-32
Identities = 205/285 (72%), Gaps = 3/285 (1%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||||| |||||| | || |||
Sbjct 2766 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCTTTCTGGACCGCAGAGGAGATTGATCTG 2707
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752
|| ||||| ||||||| | | | || ||| ||||||| | |||||
Sbjct 2706 TCTAAGGATCTTCACGACTGGAACAACAGACTCAATGACGACGAGCGTTACTTCATTTCC 2647
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| || || || ||||| || |||||| |||||||||||||| || ||||||||
Sbjct 2646 CACGTTCTTGCATTCTTCGCTGCATCCGACGGAATCGTCAACGAGAACCTTGTCGAGCGC 2587
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| || || ||| | | ||||| || ||||||||||| || || ||| |||
Sbjct 2586 TTCAGCGGTGAAGTCCAGATCCCAGAGGCACGATGCTTCTACGGATTCCAAATCATGATG 2527
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|||||| | ||||| || | || || ||||||||| || |||
Sbjct 2526 GAGAACATCCACTCCGAGACATACTCTCTCCTCATCGATACATAC 2482
Score = 125 bits (138), Expect = 7e-24
Identities = 272/402 (68%), Gaps = 4/402 (1%)
Strand=Plus/Minus
Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028
|| ||| |||| |||||||||| ||||| | | ||||| | || || | ||
Sbjct 2374 CCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATTCAAGACAAGAAGTCTACC 2315
Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088
|| | | || || || || ||||| || || ||||| ||||||| || || |||
Sbjct 2314 TTTGCTCAACGTCTTGTTGCATTCGCAGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTC 2255
Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148
|| |||| |||||| | ||||| || || || ||| |||| || |||||| ||| |||
Sbjct 2254 GCGTCCATCTTTTGGTTGAAGAAGCGTGGTCTGATGGCCGGGCTTACTTTCTCCAATGAG 2195
Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208
||||||||| | || |||||||| || |||||| || || | || || || |||
Sbjct 2194 CTCATCTCCCGTGATGAGGGTCTTCACACCGACTTCGCATGCCTTCTTTTTTCCCACTTG 2135
Query 117209 GTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAG 117268
||| || || ||| | |||| || || |||| || || ||| | || |||
Sbjct 2134 AAGCACCGCCCAAGCAAGCAAGCCGTCCAAGATGTCATCACTGAGGCCGTCACAATTGAG 2075
Query 117269 CAGCGCTTCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAAC-GA 117326
|| ||| | || || || || || |||| ||| || || | || | | || | ||
Sbjct 2074 CAAGAATTCTTGACTGAGGCTCTTCCTTGTGC-TCTTCTCGGCATGAACT-CAAATCTGA 2017
Query 117327 TGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCG 117368
|| |||||||||||||||||| || || | || || ||||
Sbjct 2016 TGAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTTCTCG 1975
>seq332
Length=18159
Score = 125 bits (138), Expect = 7e-24
Identities = 147/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || ||||| ||||| ||||||||| | || || || ||| ||| | | |
Sbjct 2460 TCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCCAGCGATACCATCG 2401
Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819
| | | ||| || |||| ||||| |||||||| || | ||||||||||| | |
Sbjct 2400 ACAATGTTAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAACGTTTGA 2341
Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879
| | ||| ||||| || || || |||| ||||||||| |||||| |||||||||||||
Sbjct 2340 TTTTCGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTATAACATCCAGAAGG 2281
Query 40880 AGGCCACGCTGCATCTAGT 40898
|| |||| || ||||| ||
Sbjct 2280 AGTCCACCCTTCATCTCGT 2262
Score = 122 bits (134), Expect = 9e-23
Identities = 138/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773
|| ||||| ||||||||| | || ||||| ||| ||||| | | | | |||||
Sbjct 2729 ACTGGCAAGACCATCACCCTTGAAGTCGAGTCCAGCGACACCATCGATAATGTCAAGTCC 2670
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
|| |||| ||||| ||||| || || ||||||| ||||| || |||| ||| |||||
Sbjct 2669 AAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAACAACGCCTGATCTTCGCTGGCAAG 2610
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893
||||| || |||| ||||| ||| ||||||||||| ||||||||| |||| || ||
Sbjct 2609 CAGCTCGAGGACGGTCGCACTCTCTCTGACTACAACATTCAGAAGGAGTCCACTCTTCAC 2550
Query 40894 CTAGT 40898
|| ||
Sbjct 2549 CTTGT 2545
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || || || | |||||||| || || || | || ||||| || |
Sbjct 2014 ATGCAAATCTTTGTTAAGACTTTGACGGGCAAGACTATTACATTGGAAGTCGAGTCCTCG 1955
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | || |||| ||||| ||| |||| || || ||||| ||||| | |||||
Sbjct 1954 GACACGATTGACAACG-TCAAGTCAAAGATTCAGGATAAGGAGGGAATCCCACCTGACCA 1896
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| ||||| |||| || || || |||||||| || | || || | | ||| |||||
Sbjct 1895 GCAGCGACTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACGTTGAGCGATTACAA 1836
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
|||||| |||||| | || || ||
Sbjct 1835 CATCCAAAAGGAGTCTACTCTCCA 1812
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| || ||||| | || || || || |
Sbjct 2242 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACTATCACTCTTGAAGTTGAGTCCTCA 2183
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| | ||| || |||| || || |||||||| ||| |||| ||
Sbjct 2182 GATACCATCGACAACGTT-AAGTCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGATCA 2124
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||| | ||||| || || || || || | || ||| | |||||||||
Sbjct 2123 GCAGCGTCTCATTTTTGCGGGAAAGCAACTTGAGGATGGCCGTACCTTGTCCGACTACAA 2064
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
|||||| |||||| | || || ||
Sbjct 2063 CATCCAAAAGGAGTCTACTCTCCA 2040
>seq507
Length=44608
Score = 120 bits (132), Expect = 3e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773
|||||||| || |||||| | || || || ||| ||||| | | | | |||||
Sbjct 34704 ACGGGCAAGACGATCACCCTTGAGGTGGAGTCCAGCGACACCATCGACAATGTCAAGTCC 34645
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
|| || | ||||| |||||||||||| |||||||||| || || |||| ||| |||||
Sbjct 34644 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 34585
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|| || || || | || || ||| |||||||||||||||||||||| |||| || ||
Sbjct 34584 CAACTCGAGGATGGCCGTACTCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCA 34526
>seq1884
Length=68653
Score = 93.3 bits (102), Expect = 4e-14
Identities = 129/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || || ||||| |||||||| | || ||||| | |||||| |
Sbjct 47156 TTCGTCAAGACTCTTACTGGCAAGACCATCACTTTGGAGGTCGAGTCATCCGACACGATC 47097
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | || || |||||||| ||| |||||||||| |||||
Sbjct 47096 GACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAGCAGCGACTG 47037
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|| | ||| || || || || || || | ||||| || ||||||||||||||||||
Sbjct 47036 ATTTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTTTCTGACTACAACATCCAGAAG 46977
Query 40879 G 40879
|
Sbjct 46976 G 46976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515197489950960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |