Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq481 152 5e-32 seq332 125 7e-24 seq507 120 3e-22 seq1884 93.3 4e-14 >seq481 Length=22500 Score = 152 bits (168), Expect = 5e-32 Identities = 205/285 (72%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| |||||| | || ||| Sbjct 2766 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCTTTCTGGACCGCAGAGGAGATTGATCTG 2707 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752 || ||||| ||||||| | | | || ||| ||||||| | ||||| Sbjct 2706 TCTAAGGATCTTCACGACTGGAACAACAGACTCAATGACGACGAGCGTTACTTCATTTCC 2647 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || ||||| || |||||| |||||||||||||| || |||||||| Sbjct 2646 CACGTTCTTGCATTCTTCGCTGCATCCGACGGAATCGTCAACGAGAACCTTGTCGAGCGC 2587 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| || || ||| | | ||||| || ||||||||||| || || ||| ||| Sbjct 2586 TTCAGCGGTGAAGTCCAGATCCCAGAGGCACGATGCTTCTACGGATTCCAAATCATGATG 2527 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | ||||| || | || || ||||||||| || ||| Sbjct 2526 GAGAACATCCACTCCGAGACATACTCTCTCCTCATCGATACATAC 2482 Score = 125 bits (138), Expect = 7e-24 Identities = 272/402 (68%), Gaps = 4/402 (1%) Strand=Plus/Minus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028 || ||| |||| |||||||||| ||||| | | ||||| | || || | || Sbjct 2374 CCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATTCAAGACAAGAAGTCTACC 2315 Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 || | | || || || || ||||| || || ||||| ||||||| || || ||| Sbjct 2314 TTTGCTCAACGTCTTGTTGCATTCGCAGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTC 2255 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 || |||| |||||| | ||||| || || || ||| |||| || |||||| ||| ||| Sbjct 2254 GCGTCCATCTTTTGGTTGAAGAAGCGTGGTCTGATGGCCGGGCTTACTTTCTCCAATGAG 2195 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 ||||||||| | || |||||||| || |||||| || || | || || || ||| Sbjct 2194 CTCATCTCCCGTGATGAGGGTCTTCACACCGACTTCGCATGCCTTCTTTTTTCCCACTTG 2135 Query 117209 GTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAG 117268 ||| || || ||| | |||| || || |||| || || ||| | || ||| Sbjct 2134 AAGCACCGCCCAAGCAAGCAAGCCGTCCAAGATGTCATCACTGAGGCCGTCACAATTGAG 2075 Query 117269 CAGCGCTTCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAAC-GA 117326 || ||| | || || || || || |||| ||| || || | || | | || | || Sbjct 2074 CAAGAATTCTTGACTGAGGCTCTTCCTTGTGC-TCTTCTCGGCATGAACT-CAAATCTGA 2017 Query 117327 TGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCG 117368 || |||||||||||||||||| || || | || || |||| Sbjct 2016 TGAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTTCTCG 1975 >seq332 Length=18159 Score = 125 bits (138), Expect = 7e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || ||||| ||||| ||||||||| | || || || ||| ||| | | | Sbjct 2460 TCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCCAGCGATACCATCG 2401 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | | ||| || |||| ||||| |||||||| || | ||||||||||| | | Sbjct 2400 ACAATGTTAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAACGTTTGA 2341 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 | | ||| ||||| || || || |||| ||||||||| |||||| ||||||||||||| Sbjct 2340 TTTTCGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTATAACATCCAGAAGG 2281 Query 40880 AGGCCACGCTGCATCTAGT 40898 || |||| || ||||| || Sbjct 2280 AGTCCACCCTTCATCTCGT 2262 Score = 122 bits (134), Expect = 9e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| ||||||||| | || ||||| ||| ||||| | | | | ||||| Sbjct 2729 ACTGGCAAGACCATCACCCTTGAAGTCGAGTCCAGCGACACCATCGATAATGTCAAGTCC 2670 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| ||||| || || ||||||| ||||| || |||| ||| ||||| Sbjct 2669 AAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAACAACGCCTGATCTTCGCTGGCAAG 2610 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || |||| ||||| ||| ||||||||||| ||||||||| |||| || || Sbjct 2609 CAGCTCGAGGACGGTCGCACTCTCTCTGACTACAACATTCAGAAGGAGTCCACTCTTCAC 2550 Query 40894 CTAGT 40898 || || Sbjct 2549 CTTGT 2545 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | |||||||| || || || | || ||||| || | Sbjct 2014 ATGCAAATCTTTGTTAAGACTTTGACGGGCAAGACTATTACATTGGAAGTCGAGTCCTCG 1955 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| ||||| ||| |||| || || ||||| ||||| | ||||| Sbjct 1954 GACACGATTGACAACG-TCAAGTCAAAGATTCAGGATAAGGAGGGAATCCCACCTGACCA 1896 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| || || || |||||||| || | || || | | ||| ||||| Sbjct 1895 GCAGCGACTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACGTTGAGCGATTACAA 1836 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| |||||| | || || || Sbjct 1835 CATCCAAAAGGAGTCTACTCTCCA 1812 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || ||||| | || || || || | Sbjct 2242 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACTATCACTCTTGAAGTTGAGTCCTCA 2183 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || |||| || || |||||||| ||| |||| || Sbjct 2182 GATACCATCGACAACGTT-AAGTCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGATCA 2124 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | ||||| || || || || || | || ||| | ||||||||| Sbjct 2123 GCAGCGTCTCATTTTTGCGGGAAAGCAACTTGAGGATGGCCGTACCTTGTCCGACTACAA 2064 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| |||||| | || || || Sbjct 2063 CATCCAAAAGGAGTCTACTCTCCA 2040 >seq507 Length=44608 Score = 120 bits (132), Expect = 3e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 |||||||| || |||||| | || || || ||| ||||| | | | | ||||| Sbjct 34704 ACGGGCAAGACGATCACCCTTGAGGTGGAGTCCAGCGACACCATCGACAATGTCAAGTCC 34645 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || || | ||||| |||||||||||| |||||||||| || || |||| ||| ||||| Sbjct 34644 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 34585 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || || || || | || || ||| |||||||||||||||||||||| |||| || || Sbjct 34584 CAACTCGAGGATGGCCGTACTCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCA 34526 >seq1884 Length=68653 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || || ||||| |||||||| | || ||||| | |||||| | Sbjct 47156 TTCGTCAAGACTCTTACTGGCAAGACCATCACTTTGGAGGTCGAGTCATCCGACACGATC 47097 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | || || |||||||| ||| |||||||||| ||||| Sbjct 47096 GACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAGCAGCGACTG 47037 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 || | ||| || || || || || || | ||||| || |||||||||||||||||| Sbjct 47036 ATTTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTTTCTGACTACAACATCCAGAAG 46977 Query 40879 G 40879 | Sbjct 46976 G 46976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515197489950960