Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq332 134 1e-26 seq507 104 2e-17 seq2637 82.4 7e-11 >seq332 Length=18159 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| |||||||| ||||| |||||||||||||||| || || |||||| Sbjct 1806 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCTCAACGTACGGCCATCCTCC 1865 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || |||||||| || || || || |||||||| || | Sbjct 1866 AGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGGGATTCCCTCCTTATCCTGA 1925 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | || | ||||||| | |||||| || | || | || ||| Sbjct 1926 ATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGTCTTG 1985 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| || ||||| || ||||| Sbjct 1986 CCCGTCAAAGTCTTAACAAAGATTTGCAT 2014 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| |||||||| ||||| |||||||| ||| || || || |||||| Sbjct 2034 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCA 2093 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || ||||| || | ||||||||||||||||| || || ||||||||||| ||| | Sbjct 2094 AGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCTTGA 2153 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||||| | |||| ||| || | | ||| || || | || | || ||| Sbjct 2154 ATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCAACTTCAAGAGTGATAGTCTTG 2213 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || |||||||| Sbjct 2214 CCGGTGAGGGTCTTGACGAAGATCTGCAT 2242 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| || | |||||| ||||||||||| || ||| Sbjct 2557 GTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCA 2616 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || || || || || ||||| || ||||||||||| ||| || || Sbjct 2617 GCGAAGATCAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTG 2676 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCA 118716 || | |||| |||||| || |||||| || | ||| | || ||||| |||| Sbjct 2677 ACATTATCGATGGTGTCGCTGGACTCGACTTCAAGGGTGATGGTCTTGCCAGTCA 2731 Score = 82.4 bits (90), Expect = 7e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || ||||| || ||| | ||||| ||||| || || || || Sbjct 2274 GTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCG 2333 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | ||| ||||| || ||||| |||||||||||||| ||| || ||| Sbjct 2334 GCGAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTA 2393 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||| || || ||| ||||| | ||| | || |||||||| || || Sbjct 2394 ACATTGTCGATGGTATCGCTGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 2453 Query 118722 TTTAC 118726 || || Sbjct 2454 TTGAC 2458 >seq507 Length=44608 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || |||||||| ||| | ||| || ||||||| Sbjct 34520 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCATCCTCG 34579 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || || ||| |||| || |||||||| || || || |||||||||||||| Sbjct 34580 AGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 34639 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | ||| ||| Sbjct 34640 ATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCCACCTCAAGGGTGATCGTCTTG 34699 Query 118710 CCGGT 118714 || || Sbjct 34700 CCCGT 34704 >seq2637 Length=17558 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/213 (69%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 134121 TTGTTCTTTACGCGTTTCATGAATAGATCGGGAATCCAC-AGGCCGAGCATTAAATCGCG 134179 || |||| || || |||||||||||||||||||||||| |||| || | | |||||| Sbjct 8320 TTCTTCTCGACACGCTTCATGAATAGATCGGGAATCCACAAGGCATAG-AAGAGATCGCG 8378 Query 134180 AGCTTTAGTGTCTTCGGAGCCCATGTTGCGTCTCAAGTTGAGAAACTCATAAATTTCCGG 134239 ||| | || || ||| ||| || || || || |||| ||| || | Sbjct 8379 AGCACGAACTTCCTCCTTGCCGTGGTTCTTTCGCAGGTCAAGGTACTCGAAAACATCGGC 8438 Query 134240 ATGCCACGGCTCGATGTAGGCGGCGAGGGCACCTTTTCGC---TTACCACCCTGGTCGAC 134296 ||||| ||||||| |||| |||| |||||| ||| || ||||||||||| || Sbjct 8439 GTGCCATGGCTCGAGGTAGATAGCGAAAGCACCTGGGCGCTTGTTGCCACCCTGGTCAAC 8498 Query 134297 GTGACGCACCATGTTGTTGAAGACTCTCAACAT 134329 | | | ||||||||||||||| |||||| Sbjct 8499 ATATCTAGCAGTGTTGTTGAAGACTCGCAACAT 8531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433812576484732