Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq332 134 1e-26
seq507 104 2e-17
seq2637 82.4 7e-11
>seq332
Length=18159
Score = 134 bits (148), Expect = 1e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| |||||||| ||||| |||||||||||||||| || || ||||||
Sbjct 1806 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCTCAACGTACGGCCATCCTCC 1865
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || ||||| |||| || |||||||| || || || || |||||||| || |
Sbjct 1866 AGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGGGATTCCCTCCTTATCCTGA 1925
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| ||| || || | || | ||||||| | |||||| || | || | || |||
Sbjct 1926 ATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGTCTTG 1985
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| |||| ||| || ||||| || |||||
Sbjct 1986 CCCGTCAAAGTCTTAACAAAGATTTGCAT 2014
Score = 129 bits (142), Expect = 5e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| |||||||| ||||| |||||||| ||| || || || ||||||
Sbjct 2034 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCA 2093
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| || ||||| || | ||||||||||||||||| || || ||||||||||| ||| |
Sbjct 2094 AGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCTTGA 2153
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || ||||| | |||| ||| || | | ||| || || | || | || |||
Sbjct 2154 ATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCAACTTCAAGAGTGATAGTCTTG 2213
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || || || || || ||||||||
Sbjct 2214 CCGGTGAGGGTCTTGACGAAGATCTGCAT 2242
Score = 95.1 bits (104), Expect = 1e-14
Identities = 126/175 (72%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || ||||||||||| || | |||||| ||||||||||| || |||
Sbjct 2557 GTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCA 2616
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| || || || || || ||||| || ||||||||||| ||| || ||
Sbjct 2617 GCGAAGATCAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTG 2676
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCA 118716
|| | |||| |||||| || |||||| || | ||| | || ||||| ||||
Sbjct 2677 ACATTATCGATGGTGTCGCTGGACTCGACTTCAAGGGTGATGGTCTTGCCAGTCA 2731
Score = 82.4 bits (90), Expect = 7e-11
Identities = 129/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || ||||| || ||| | ||||| ||||| || || || ||
Sbjct 2274 GTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCG 2333
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| | || | ||| ||||| || ||||| |||||||||||||| ||| || |||
Sbjct 2334 GCGAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTA 2393
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| ||| || || ||| ||||| | ||| | || |||||||| || ||
Sbjct 2394 ACATTGTCGATGGTATCGCTGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 2453
Query 118722 TTTAC 118726
|| ||
Sbjct 2454 TTGAC 2458
>seq507
Length=44608
Score = 104 bits (114), Expect = 2e-17
Identities = 134/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| || ||||| || || |||||||| ||| | ||| || |||||||
Sbjct 34520 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCATCCTCG 34579
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| || || || ||| |||| || |||||||| || || || ||||||||||||||
Sbjct 34580 AGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 34639
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| || ||| ||||| | ||| | ||| |||
Sbjct 34640 ATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCCACCTCAAGGGTGATCGTCTTG 34699
Query 118710 CCGGT 118714
|| ||
Sbjct 34700 CCCGT 34704
>seq2637
Length=17558
Score = 82.4 bits (90), Expect = 7e-11
Identities = 148/213 (69%), Gaps = 5/213 (2%)
Strand=Plus/Plus
Query 134121 TTGTTCTTTACGCGTTTCATGAATAGATCGGGAATCCAC-AGGCCGAGCATTAAATCGCG 134179
|| |||| || || |||||||||||||||||||||||| |||| || | | ||||||
Sbjct 8320 TTCTTCTCGACACGCTTCATGAATAGATCGGGAATCCACAAGGCATAG-AAGAGATCGCG 8378
Query 134180 AGCTTTAGTGTCTTCGGAGCCCATGTTGCGTCTCAAGTTGAGAAACTCATAAATTTCCGG 134239
||| | || || ||| ||| || || || || |||| ||| || |
Sbjct 8379 AGCACGAACTTCCTCCTTGCCGTGGTTCTTTCGCAGGTCAAGGTACTCGAAAACATCGGC 8438
Query 134240 ATGCCACGGCTCGATGTAGGCGGCGAGGGCACCTTTTCGC---TTACCACCCTGGTCGAC 134296
||||| ||||||| |||| |||| |||||| ||| || ||||||||||| ||
Sbjct 8439 GTGCCATGGCTCGAGGTAGATAGCGAAAGCACCTGGGCGCTTGTTGCCACCCTGGTCAAC 8498
Query 134297 GTGACGCACCATGTTGTTGAAGACTCTCAACAT 134329
| | | ||||||||||||||| ||||||
Sbjct 8499 ATATCTAGCAGTGTTGTTGAAGACTCGCAACAT 8531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433812576484732
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |