Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq1217 82.4 6e-11 >seq1217 Length=16346 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 20225 TGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACA 20284 |||| || || || || || || ||| |||||||||| || |||||||| ||| | | | Sbjct 12873 TGGGACCAGTCTACGGCTTCCAGTGGCGACATTTTGGTGCCGAATATGTCGACGCGCAGA 12932 Query 20285 CAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGA 20344 | | ||| ||| | || || || || || | | |||||| | | || | | Sbjct 12933 CGGACTATACGGGAAAGGGTGTTGACCAGTTGGCAGAGGTTATTCACAAGCTGAAGAACA 12992 Query 20345 ACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGG 20404 | || | || | ||||| ||| | |||| |||||| | |||||| || |||||| Sbjct 12993 ATCCCTATGATCGCAGAATCATTCTCAGCGCATGGAACCCCAAAGATATGAAACTAATGG 13052 Query 20405 CTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTT 20442 ||||||| || || |||||| | ||| ||||| |||||| Sbjct 13053 CTTTGCCACCTTGCCATATG-TTTGCGCAATTCTACGTT 13090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399167599899595