Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq332 111 1e-19
seq507 100 2e-16
>seq332
Length=18159
Score = 111 bits (122), Expect = 1e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || |||||| || |||||||| ||| ||| || | || |||
Sbjct 1806 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCTCAACGTACGGCCATCCTCC 1865
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || |||| ||||| ||||| || || | |||||||| ||| |
Sbjct 1866 AGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGGGATTCCCTCCTTATCCTGA 1925
Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306
|| ||| ||| || | | || | ||||| ||| || |||| ||||| |||||
Sbjct 1926 ATCTTTGACTTGAC-GTTGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGTCTT 1984
Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||||||| |||||| ||||||||||||||
Sbjct 1985 GCCCGTCAAAGTCTTAACAAAGATTTGCAT 2014
Score = 96.9 bits (106), Expect = 3e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193
|| || ||| ||||||||| ||||| |||||| || ||| |||| || |||||
Sbjct 2268 TGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGC 2327
Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253
|| |||||||| ||||| || || ||||| ||||| | |||||||||||| ||| ||
Sbjct 2328 TTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTG 2387
Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313
|||||| | | | | || | ||| ||||| | ||| || |||||||| ||
Sbjct 2388 GACTTAACATTGTCGATGGTATCGCTGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTG 2447
Query 45314 AGAGTCTTCAC 45324
|| ||||| ||
Sbjct 2448 AGGGTCTTGAC 2458
Score = 95.1 bits (104), Expect = 1e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||||||||||||||| || |||| |||| || || ||
Sbjct 2550 GTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCGTCCTCGAGCTG 2609
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || ||||| |||| || |||||||| ||||| | ||||||||||||| ||| ||
Sbjct 2610 CTTGCCAGCGAAGATCAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTT 2669
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | |||| | ||| || || | ||| || |||||||| ||
Sbjct 2670 GGACTTGACATTATCGATGGTGTCGCTGGACTCGACTTCAAGGGTGATGGTCTTGCCAGT 2729
Query 45313 CA 45314
||
Sbjct 2730 CA 2731
>seq507
Length=44608
Score = 100 bits (110), Expect = 2e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || ||| ||||||||| |||||||||||| || || | || ||
Sbjct 34520 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCATCCTCG 34579
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
||||| || |||||||| |||| ||||| ||||| || || | ||||||||||||
Sbjct 34580 AGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 34639
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||||||||| | ||| |||||||||
Sbjct 34640 ATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCCACCTCAAGGGTGATCGTCTTG 34699
Query 45308 CCCGT 45312
|||||
Sbjct 34700 CCCGT 34704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395058968705791
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |