Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2637 293 2e-74 seq481 113 4e-20 seq332 91.5 1e-13 >seq2637 Length=17558 Score = 293 bits (324), Expect = 2e-74 Identities = 642/955 (67%), Gaps = 10/955 (1%) Strand=Plus/Plus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 ||||| | ||||| || || | ||||||| || | |||||| |||||||| || || Sbjct 8011 GAGGCCAAGTTGCAGACAGCAATCTCGTCTGGCGAAGAGTACTCCACAATTTCAGTGCAC 8070 Query 23087 AGATTGCTACACTTT---ATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAA 23143 | || | | || || || || | || |||||||||| ||||| ||||| | | Sbjct 8071 AAGTT---AGAGCTTCGGATAGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCATGCA 8127 Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 ||||||||||||||| | || | || |||||| || | ||||| ||| | ||| Sbjct 8128 TCCTTGTAGAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAGGATGGAGTACCAA 8187 Query 23204 ATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAA 23262 | | ||||| | | | ||| || ||| ||| || | ||||||||| | ||||| Sbjct 8188 AGCTTTTGAGCCTTGATA-GTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCGTACAG 8246 Query 23263 CGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGA 23321 || || || || ||||||| ||| || |||| ||| || | | | || ||||| | Sbjct 8247 AGCCTCGAACTCATCACCGTAGACA-TCAGCCAAGCCAGGGCACTCATTGGGGCACATAA 8305 Query 23322 GACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381 || ||||| | || || || || || |||| || ||||| || ||||| | || | Sbjct 8306 GAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAATAGATCGGGAATCCACAAGGCAT 8365 Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441 |||| || ||||| || || || ||||| |||||| ||||||| || || | | | Sbjct 8366 AGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGTGGTTCTTTCGCAGGTCAAGGTACT 8425 Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501 | || || || || ||||| ||||||||||| | || || || || || | ||| |||| Sbjct 8426 CGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCGAAAGCACCTGGGCGCTTGTTGC 8485 Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561 | ||||| || || || | || ||||||||| | |||| | ||| || || | |||| Sbjct 8486 CACCCTGGTCAACATATCTAGCAGTGTTGTTGAAGACTCGCAACATGGGAACAATTCCGT 8545 Query 23562 TGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGA 23621 |||| ||| || || | | ||| | || |||| |||| | || | Sbjct 8546 TGGAGTTTCCGTTGGTACCAGCGATGTAGGCACCAGTGGCACGAATTCTGTGGATGTTTA 8605 Query 23622 AACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGC 23681 ||| || ||||| | || || ||||| || || || || ||||||||||||| Sbjct 8606 GACCAATACCTCCCGCATTCTTGGAAATCATGGCACAGGCCTTGAGGGTGTCGTAGATGC 8665 Query 23682 CCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCG 23741 | || ||||| || || || | |||| | ||| || ||||| | || || | |||| Sbjct 8666 CGTCAATGCTATCTTCCTTCATGTCGACAAGGAAGCATGAAGAAAGCTGAGCCTGTGGCG 8725 Query 23742 TAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGT 23801 || | || | || ||||| || || || || ||||| | ||||| | |||| Sbjct 8726 TACCAGCGGCAAAGAGTGTGGGTGATGCATGAGTGAAGTACTTGCTTGACATCAAGTTGT 8785 Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861 | || || || || || || || ||||| ||||| || || | || |||||||| |||| Sbjct 8786 ATGTCTCAATAGCAGCCTCGATATCCTCACCGTGGATGCCAACCGCCACGCGCATAATCA 8845 Query 23862 TGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCG 23921 | | |||||| | ||| | | ||| | | || |||||||| || | | | Sbjct 8846 TATGTTGAGGGCGCTCAGCAATCTTGCCATCGAGACGGAGGAGATATGATCGCTCAAGGG 8905 Query 23922 TTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 | || ||||||||||| | ||||| ||||||||||||| || ||||| || || Sbjct 8906 TCTTGAATCCAAAATATTGGTAGTTGAAGTCACGATCGTAGACAATGGCAGAGTT 8960 >seq481 Length=22500 Score = 113 bits (124), Expect = 4e-20 Identities = 228/335 (68%), Gaps = 5/335 (1%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || ||||| || ||||||| || || | || ||| Sbjct 2766 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCTTTCTGGACCGCAGAGGAGATTGATCTG 2707 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 ||||||||||| ||| ||| | | ||||| || ||| | | || ||| Sbjct 2706 TCTAAGGATCTTCACGACTGGAACAACAGACTCAATGACGACGAGCGTTACTTCATTTCC 2647 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || ||||| |||||||| || || || |||||||| | ||||| | Sbjct 2646 CACGTTCTTGCATTCTTCGCTGCATCCGACGGAATCGTCAACGAGAACCTTGTCGAGCGC 2587 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || ||||| || | | ||||| ||||||| |||||||| ||| | || Sbjct 2586 TTCAGCGGTGAAGTCCAGATCCCAGAGGCACGATGCTTCTACGGATTCCAAATCATGATG 2527 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA-CAACGA 57865 || ||| | || || || | || || || ||||||||||| ||| | ||||| || Sbjct 2526 GAGAACATCCACTCCGAGACATACTCTCTCCTCATCGATACATACATCAAGGAGCAGGCT 2467 Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAA 57900 | | || || || |||||||| ||||| |||| Sbjct 2466 CAACGCACATA-CCTCTTCAACGCTATCGAGACAA 2433 >seq332 Length=18159 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||| |||| ||||| || || || | || || || | || Sbjct 2014 ATGCAAATCTTTGTTAAGACTTTGACGGGCAAGACTATTACATTGGAAGTCGAGTCCTCG 1955 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | ||| ||||| || | || || ||||| Sbjct 1954 GACACGATTGACAACGTCAAGTCAAAGATTCA-GGATAAGGAGGGAATCCCACCTGACCA 1896 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || ||||| || ||| |||| || || |||||||||| || Sbjct 1895 GCAGCGACTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACGTTGAGCGATTACAA 1836 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| ||||| || || ||||| || |||| ||| Sbjct 1835 CATCCAAAAGGAGTCTACTCTCCACTTGGTCCTT 1802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445747616518320