Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 293 2e-74
seq481 113 4e-20
seq332 91.5 1e-13
>seq2637
Length=17558
Score = 293 bits (324), Expect = 2e-74
Identities = 642/955 (67%), Gaps = 10/955 (1%)
Strand=Plus/Plus
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
||||| | ||||| || || | ||||||| || | |||||| |||||||| || ||
Sbjct 8011 GAGGCCAAGTTGCAGACAGCAATCTCGTCTGGCGAAGAGTACTCCACAATTTCAGTGCAC 8070
Query 23087 AGATTGCTACACTTT---ATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAA 23143
| || | | || || || || | || |||||||||| ||||| ||||| | |
Sbjct 8071 AAGTT---AGAGCTTCGGATAGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCATGCA 8127
Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203
||||||||||||||| | || | || |||||| || | ||||| ||| | |||
Sbjct 8128 TCCTTGTAGAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAGGATGGAGTACCAA 8187
Query 23204 ATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAA 23262
| | ||||| | | | ||| || ||| ||| || | ||||||||| | |||||
Sbjct 8188 AGCTTTTGAGCCTTGATA-GTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCGTACAG 8246
Query 23263 CGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGA 23321
|| || || || ||||||| ||| || |||| ||| || | | | || ||||| |
Sbjct 8247 AGCCTCGAACTCATCACCGTAGACA-TCAGCCAAGCCAGGGCACTCATTGGGGCACATAA 8305
Query 23322 GACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381
|| ||||| | || || || || || |||| || ||||| || ||||| | || |
Sbjct 8306 GAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAATAGATCGGGAATCCACAAGGCAT 8365
Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441
|||| || ||||| || || || ||||| |||||| ||||||| || || | | |
Sbjct 8366 AGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGTGGTTCTTTCGCAGGTCAAGGTACT 8425
Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501
| || || || || ||||| ||||||||||| | || || || || || | ||| ||||
Sbjct 8426 CGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCGAAAGCACCTGGGCGCTTGTTGC 8485
Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561
| ||||| || || || | || ||||||||| | |||| | ||| || || | ||||
Sbjct 8486 CACCCTGGTCAACATATCTAGCAGTGTTGTTGAAGACTCGCAACATGGGAACAATTCCGT 8545
Query 23562 TGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGA 23621
|||| ||| || || | | ||| | || |||| |||| | || |
Sbjct 8546 TGGAGTTTCCGTTGGTACCAGCGATGTAGGCACCAGTGGCACGAATTCTGTGGATGTTTA 8605
Query 23622 AACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGC 23681
||| || ||||| | || || ||||| || || || || |||||||||||||
Sbjct 8606 GACCAATACCTCCCGCATTCTTGGAAATCATGGCACAGGCCTTGAGGGTGTCGTAGATGC 8665
Query 23682 CCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCG 23741
| || ||||| || || || | |||| | ||| || ||||| | || || | ||||
Sbjct 8666 CGTCAATGCTATCTTCCTTCATGTCGACAAGGAAGCATGAAGAAAGCTGAGCCTGTGGCG 8725
Query 23742 TAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGT 23801
|| | || | || ||||| || || || || ||||| | ||||| | ||||
Sbjct 8726 TACCAGCGGCAAAGAGTGTGGGTGATGCATGAGTGAAGTACTTGCTTGACATCAAGTTGT 8785
Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861
| || || || || || || || ||||| ||||| || || | || |||||||| ||||
Sbjct 8786 ATGTCTCAATAGCAGCCTCGATATCCTCACCGTGGATGCCAACCGCCACGCGCATAATCA 8845
Query 23862 TGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCG 23921
| | |||||| | ||| | | ||| | | || |||||||| || | | |
Sbjct 8846 TATGTTGAGGGCGCTCAGCAATCTTGCCATCGAGACGGAGGAGATATGATCGCTCAAGGG 8905
Query 23922 TTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976
| || ||||||||||| | ||||| ||||||||||||| || ||||| || ||
Sbjct 8906 TCTTGAATCCAAAATATTGGTAGTTGAAGTCACGATCGTAGACAATGGCAGAGTT 8960
>seq481
Length=22500
Score = 113 bits (124), Expect = 4e-20
Identities = 228/335 (68%), Gaps = 5/335 (1%)
Strand=Plus/Minus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||| ||||| || ||||| || ||||||| || || | || |||
Sbjct 2766 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCTTTCTGGACCGCAGAGGAGATTGATCTG 2707
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
||||||||||| ||| ||| | | ||||| || ||| | | || |||
Sbjct 2706 TCTAAGGATCTTCACGACTGGAACAACAGACTCAATGACGACGAGCGTTACTTCATTTCC 2647
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||| | || || ||||| |||||||| || || || |||||||| | ||||| |
Sbjct 2646 CACGTTCTTGCATTCTTCGCTGCATCCGACGGAATCGTCAACGAGAACCTTGTCGAGCGC 2587
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| ||||| || | | ||||| ||||||| |||||||| ||| | ||
Sbjct 2586 TTCAGCGGTGAAGTCCAGATCCCAGAGGCACGATGCTTCTACGGATTCCAAATCATGATG 2527
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA-CAACGA 57865
|| ||| | || || || | || || || ||||||||||| ||| | ||||| ||
Sbjct 2526 GAGAACATCCACTCCGAGACATACTCTCTCCTCATCGATACATACATCAAGGAGCAGGCT 2467
Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAA 57900
| | || || || |||||||| ||||| ||||
Sbjct 2466 CAACGCACATA-CCTCTTCAACGCTATCGAGACAA 2433
>seq332
Length=18159
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || |||||| |||| ||||| || || || | || || || | ||
Sbjct 2014 ATGCAAATCTTTGTTAAGACTTTGACGGGCAAGACTATTACATTGGAAGTCGAGTCCTCG 1955
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | ||||| || ||| | ||| ||||| || | || || |||||
Sbjct 1954 GACACGATTGACAACGTCAAGTCAAAGATTCA-GGATAAGGAGGGAATCCCACCTGACCA 1896
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| || || || ||||| || ||| |||| || || |||||||||| ||
Sbjct 1895 GCAGCGACTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACGTTGAGCGATTACAA 1836
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
||| ||||| || || ||||| || |||| |||
Sbjct 1835 CATCCAAAAGGAGTCTACTCTCCACTTGGTCCTT 1802
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445747616518320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |