Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 120 6e-22
seq481 118 2e-21
seq1217 95.1 2e-14
>seq2637
Length=17558
Score = 120 bits (132), Expect = 6e-22
Identities = 178/250 (71%), Gaps = 2/250 (1%)
Strand=Plus/Plus
Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851
||||| ||| ||||||| || || || |||| || || || || || || ||||||
Sbjct 8614 CCTCCCGCATTCTTGGAAATCATGGCACAGGCCTTGAGGGTGTCGTAGATGCCGTCAATG 8673
Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGACTGTTCCACA 94910
||||| || | | | | | ||||||||| || ||||| || | |||| | || |||
Sbjct 8674 CTATCTTCCTTCATGTCGACAAGGAAGCATGAAGAAAGCTGAGCCTGTGGC-GTACCAGC 8732
Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970
||| |||||||| || ||||| || || || | || ||||| | | ||||| ||
Sbjct 8733 GGCAAAGAGTGTGGGTGATGCATGAGTGAAGTACTTGCTTGACATCAAGTTGTATGTCTC 8792
Query 94971 AATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTG 95030
||| ||| | ||| || ||||| ||||| || ||||| ||||||||||| | ||
Sbjct 8793 AATAGCAGCCTCGATATCCTCACCGTGGATGCCAACCGCCACGCGCATAATCATATGTTG 8852
Query 95031 AGGGCGCTCA 95040
||||||||||
Sbjct 8853 AGGGCGCTCA 8862
>seq481
Length=22500
Score = 118 bits (130), Expect = 2e-21
Identities = 348/529 (66%), Gaps = 12/529 (2%)
Strand=Plus/Minus
Query 101851 CATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAA--CGA-TTTGGC 101907
|||||||||||||| | |||||| | | ||||| ||| ||| || | | || ||
Sbjct 2369 CATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATTCAAGACAAGAAGTCTACCTTTGC 2310
Query 101908 GGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATC 101967
||| ||||||| || || || ||||| || |||||||| ||| ||||||| ||
Sbjct 2309 TCAACGTCTTGTTGCATTCGCAGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCGTC 2250
Query 101968 CATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027
||| || ||| | ||||| | ||| | || | || || || | |||||||||| ||||
Sbjct 2249 CATCTTTTGGTTGAAGAAGCGTGGTCTGATGGCCGGGCTTACTTTCTCCAATGAGCTCAT 2190
Query 102028 TTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGT 102087
|| | || || |||||||| |||||| |||||| | || || | |||
Sbjct 2189 CTCCCGTGATGAGGGTCTTCACACCGACTTCGCATGCCTTCTTTTTTCCCA----CTTGA 2134
Query 102088 TGATACCCCATCAAG--AGAAAG-GATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGA 102144
| ||| | |||| || ||| | | || | ||||||| |||||| ||||||
Sbjct 2133 AG-CACCGC-CCAAGCAAGCAAGCCGTCCAAGATGTCATCACTGAGGCCGTCACAATTGA 2076
Query 102145 ACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGAT 102204
|||||||| | || | | || ||| | | | || ||||||| || ||||
Sbjct 2075 GCAAGAATTCTTGACTGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACTCAAATCTGAT 2016
Query 102205 GAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCA 102264
|| || ||||| || || || || ||| || | | | | || || ||
Sbjct 2015 GAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTTCTCGCCCTTGGCAATGAGAAAGT 1956
Query 102265 CTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAA 102324
||| || ||||||||||| ||| |||||||| || || || |||| ||||||||
Sbjct 1955 CTACAAGGTTACCAACCCATTCGACTTCATGGAGAACATCTCTCTCGCCGGAAAGACCAA 1896
Query 102325 CTTTTTTGAAAAGAGAGTCGCCGAGTATCAACGTGCCCAGGTCATGGCT 102373
||| || || ||| | || | || || ||| ||| |||||||||
Sbjct 1895 CTTCTTCGAGAAGCGTGTTGGTGACTACCAAAAAGCCGGTGTCATGGCT 1847
>seq1217
Length=16346
Score = 95.1 bits (104), Expect = 2e-14
Identities = 156/221 (71%), Gaps = 8/221 (4%)
Strand=Plus/Plus
Query 35403 TGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTT 35462
||||||| || ||||| ||||| ||||| ||||||||||| ||||||| |
Sbjct 12873 TGGGACCAGTCTACGGCTTCCAGTGGCGACATTTTGGTGCCGAATATGTCGACGCGCAGA 12932
Query 35463 CCGATTATACTGGAAAGGGTATTGATCAATTGGCCAA---TATACTAAAGACCCTGAGAG 35519
| || ||||| ||||||||| |||| || ||||| | ||| | ||| |||| ||
Sbjct 12933 CGGACTATACGGGAAAGGGTGTTGACCAGTTGGCAGAGGTTATTCACAAG---CTGA-AG 12988
Query 35520 AA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTT 35578
|| ||||| ||||| | || || ||| | | |||||||| || | ||| | | ||
Sbjct 12989 AACAATCCCTATGATCGCAGAATCATTCTCAGCGCATGGAACCCCAAAGATATGAAACTA 13048
Query 35579 ATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619
|||||| | || || ||||| ||| ||| ||||| || ||
Sbjct 13049 ATGGCTTTGCCACCTTGCCATATGTTTGCGCAATTCTACGT 13089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989541258939305
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |