Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2637 120 6e-22 seq481 118 2e-21 seq1217 95.1 2e-14 >seq2637 Length=17558 Score = 120 bits (132), Expect = 6e-22 Identities = 178/250 (71%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 ||||| ||| ||||||| || || || |||| || || || || || || |||||| Sbjct 8614 CCTCCCGCATTCTTGGAAATCATGGCACAGGCCTTGAGGGTGTCGTAGATGCCGTCAATG 8673 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGACTGTTCCACA 94910 ||||| || | | | | | ||||||||| || ||||| || | |||| | || ||| Sbjct 8674 CTATCTTCCTTCATGTCGACAAGGAAGCATGAAGAAAGCTGAGCCTGTGGC-GTACCAGC 8732 Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970 ||| |||||||| || ||||| || || || | || ||||| | | ||||| || Sbjct 8733 GGCAAAGAGTGTGGGTGATGCATGAGTGAAGTACTTGCTTGACATCAAGTTGTATGTCTC 8792 Query 94971 AATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTG 95030 ||| ||| | ||| || ||||| ||||| || ||||| ||||||||||| | || Sbjct 8793 AATAGCAGCCTCGATATCCTCACCGTGGATGCCAACCGCCACGCGCATAATCATATGTTG 8852 Query 95031 AGGGCGCTCA 95040 |||||||||| Sbjct 8853 AGGGCGCTCA 8862 >seq481 Length=22500 Score = 118 bits (130), Expect = 2e-21 Identities = 348/529 (66%), Gaps = 12/529 (2%) Strand=Plus/Minus Query 101851 CATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAA--CGA-TTTGGC 101907 |||||||||||||| | |||||| | | ||||| ||| ||| || | | || || Sbjct 2369 CATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATTCAAGACAAGAAGTCTACCTTTGC 2310 Query 101908 GGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATC 101967 ||| ||||||| || || || ||||| || |||||||| ||| ||||||| || Sbjct 2309 TCAACGTCTTGTTGCATTCGCAGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCGTC 2250 Query 101968 CATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027 ||| || ||| | ||||| | ||| | || | || || || | |||||||||| |||| Sbjct 2249 CATCTTTTGGTTGAAGAAGCGTGGTCTGATGGCCGGGCTTACTTTCTCCAATGAGCTCAT 2190 Query 102028 TTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGT 102087 || | || || |||||||| |||||| |||||| | || || | ||| Sbjct 2189 CTCCCGTGATGAGGGTCTTCACACCGACTTCGCATGCCTTCTTTTTTCCCA----CTTGA 2134 Query 102088 TGATACCCCATCAAG--AGAAAG-GATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGA 102144 | ||| | |||| || ||| | | || | ||||||| |||||| |||||| Sbjct 2133 AG-CACCGC-CCAAGCAAGCAAGCCGTCCAAGATGTCATCACTGAGGCCGTCACAATTGA 2076 Query 102145 ACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGAT 102204 |||||||| | || | | || ||| | | | || ||||||| || |||| Sbjct 2075 GCAAGAATTCTTGACTGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACTCAAATCTGAT 2016 Query 102205 GAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCA 102264 || || ||||| || || || || ||| || | | | | || || || Sbjct 2015 GAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTTCTCGCCCTTGGCAATGAGAAAGT 1956 Query 102265 CTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAA 102324 ||| || ||||||||||| ||| |||||||| || || || |||| |||||||| Sbjct 1955 CTACAAGGTTACCAACCCATTCGACTTCATGGAGAACATCTCTCTCGCCGGAAAGACCAA 1896 Query 102325 CTTTTTTGAAAAGAGAGTCGCCGAGTATCAACGTGCCCAGGTCATGGCT 102373 ||| || || ||| | || | || || ||| ||| ||||||||| Sbjct 1895 CTTCTTCGAGAAGCGTGTTGGTGACTACCAAAAAGCCGGTGTCATGGCT 1847 >seq1217 Length=16346 Score = 95.1 bits (104), Expect = 2e-14 Identities = 156/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Plus Query 35403 TGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTT 35462 ||||||| || ||||| ||||| ||||| ||||||||||| ||||||| | Sbjct 12873 TGGGACCAGTCTACGGCTTCCAGTGGCGACATTTTGGTGCCGAATATGTCGACGCGCAGA 12932 Query 35463 CCGATTATACTGGAAAGGGTATTGATCAATTGGCCAA---TATACTAAAGACCCTGAGAG 35519 | || ||||| ||||||||| |||| || ||||| | ||| | ||| |||| || Sbjct 12933 CGGACTATACGGGAAAGGGTGTTGACCAGTTGGCAGAGGTTATTCACAAG---CTGA-AG 12988 Query 35520 AA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTT 35578 || ||||| ||||| | || || ||| | | |||||||| || | ||| | | || Sbjct 12989 AACAATCCCTATGATCGCAGAATCATTCTCAGCGCATGGAACCCCAAAGATATGAAACTA 13048 Query 35579 ATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 |||||| | || || ||||| ||| ||| ||||| || || Sbjct 13049 ATGGCTTTGCCACCTTGCCATATGTTTGCGCAATTCTACGT 13089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989541258939305