Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq481 158 2e-33 >seq481 Length=22500 Score = 158 bits (174), Expect = 2e-33 Identities = 349/517 (68%), Gaps = 11/517 (2%) Strand=Plus/Plus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||||||||| ||||| ||||| || ||||| || || |||||||| | | || || || Sbjct 1862 TTTTTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTT 1921 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGA-AA 41891 |||||||| || || || |||||||| || || | ||| | | | |||| || || Sbjct 1922 CTCCATGAAGTCGAATGGGTTGGTAACCTTGTAGACTTTCTCAT-TGCCAAGGGCGAGAA 1980 Query 41892 TCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 41951 | | ||| || | ||| || || ||| ||||||| | | ||||| || | || Sbjct 1981 GGAGACGATCAGCAACGAACTCGATGTATTGCTTCATCAGATTTGAGTTCATGCCGAGAA 2040 Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 | | ||||||||| |||| | |||||||| ||||| | ||| || || || || | Sbjct 2041 GAGCACAAGGAAGAGCCTCAGTCAAGAATTCTTGCTCAATTGTGACGGCCTCAGTGATGA 2100 Query 42012 TAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 42069 | |||| || | || | || || | | | || || ||| | | ||||| Sbjct 2101 CA--TCTTGGACGGCTTGCTTGCTTGGGCGGTGCTTCAAGTGGGAAAAAAGAAGGCATGC 2158 Query 42070 GAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 42129 ||| ||| ||| ||||||||||| | || | || ||||| || || || |||| Sbjct 2159 GAAGTCGGTGTGAAGACCCTCATCACGGGAGATGAGCTCATTGGAGAAAGTAAGCCCGGC 2218 Query 42130 CATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCC 42189 ||| || |||||||| || | |||||| || ||||| ||||| || || |||||||| || Sbjct 2219 CATCAGACCACGCTTCTTCAACCAAAAGATGGACGCGAATGAACCGGAGAAGAAGATACC 2278 Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA----TAACCGGCACTGTCATGTATCC 42245 || || || || || |||| ||| | | || || | | |||| || |||| Sbjct 2279 CTCAACAGCTGCGAATGCAACAAGACGTTGAGCAAAGGTAGACTTC-TTGTCTTGAATCC 2337 Query 42246 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282 | | |||||| ||||||||||| || | ||||| Sbjct 2338 ATCTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 2374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671110919871960