Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq481 158 2e-33
>seq481
Length=22500
Score = 158 bits (174), Expect = 2e-33
Identities = 349/517 (68%), Gaps = 11/517 (2%)
Strand=Plus/Plus
Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832
||||||||| ||||| ||||| || ||||| || || |||||||| | | || || ||
Sbjct 1862 TTTTTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTT 1921
Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGA-AA 41891
|||||||| || || || |||||||| || || | ||| | | | |||| || ||
Sbjct 1922 CTCCATGAAGTCGAATGGGTTGGTAACCTTGTAGACTTTCTCAT-TGCCAAGGGCGAGAA 1980
Query 41892 TCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 41951
| | ||| || | ||| || || ||| ||||||| | | ||||| || | ||
Sbjct 1981 GGAGACGATCAGCAACGAACTCGATGTATTGCTTCATCAGATTTGAGTTCATGCCGAGAA 2040
Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011
| | ||||||||| |||| | |||||||| ||||| | ||| || || || || |
Sbjct 2041 GAGCACAAGGAAGAGCCTCAGTCAAGAATTCTTGCTCAATTGTGACGGCCTCAGTGATGA 2100
Query 42012 TAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 42069
| |||| || | || | || || | | | || || ||| | | |||||
Sbjct 2101 CA--TCTTGGACGGCTTGCTTGCTTGGGCGGTGCTTCAAGTGGGAAAAAAGAAGGCATGC 2158
Query 42070 GAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 42129
||| ||| ||| ||||||||||| | || | || ||||| || || || ||||
Sbjct 2159 GAAGTCGGTGTGAAGACCCTCATCACGGGAGATGAGCTCATTGGAGAAAGTAAGCCCGGC 2218
Query 42130 CATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCC 42189
||| || |||||||| || | |||||| || ||||| ||||| || || |||||||| ||
Sbjct 2219 CATCAGACCACGCTTCTTCAACCAAAAGATGGACGCGAATGAACCGGAGAAGAAGATACC 2278
Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA----TAACCGGCACTGTCATGTATCC 42245
|| || || || || |||| ||| | | || || | | |||| || ||||
Sbjct 2279 CTCAACAGCTGCGAATGCAACAAGACGTTGAGCAAAGGTAGACTTC-TTGTCTTGAATCC 2337
Query 42246 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282
| | |||||| ||||||||||| || | |||||
Sbjct 2338 ATCTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 2374
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671110919871960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |