Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2637 125 1e-23 seq481 118 2e-21 >seq2637 Length=17558 Score = 125 bits (138), Expect = 1e-23 Identities = 319/483 (66%), Gaps = 2/483 (0%) Strand=Plus/Minus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 |||| ||| ||||| ||||| || || ||||| ||| | || ||||| | || || | Sbjct 8503 GATATGTTGACCAGGGTGGCAACAAGCGCCCAGGTGCTTTCGCTATCTACCTCGAGCCAT 8444 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||||| || ||||| || | | || |||| || ||| ||| || || | | Sbjct 8443 GGCACGCCGATGTTTTCGAGTACCTTGACCTGCGAAAGAACCACGGCAAGGAGGAAGTTC 8384 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 | || | || | || ||||| | ||| | || ||| | ||||||||||| ||| | Sbjct 8383 GTGCTCGCGATCTCTTCTATGCCTTGTGGATTCCCGATCTATTCATGAAGCGTGTCGAGA 8324 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 | | | | |||| || ||||||||| | || || || || | ||| || | Sbjct 8323 AGAACGCCGAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGCTTGGCTGATGTCTACG 8264 Query 97105 GCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGA 97163 | || ||||| ||||| |||| | |||||| | |||||| | || |||| | Sbjct 8263 GTGATGAGTTCGAGGCTCTGTACGAGAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACTA 8204 Query 97164 GTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223 || | || | | | || ||| | ||||| | |||||| ||||| |||| || Sbjct 8203 -TCAAGGCTCAAAAGCTTTGGTACTCCATCCTCGAGGCTCAAACCGAGACCGGAAACCCA 8145 Query 97224 TACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATC 97283 | ||| |||||||||||| | || || || |||||||| || | || || ||| Sbjct 8144 TTCATGCTCTACAAGGATGCATGCAACCGAAAGAGCAACCAGAAGAACCTTGGTACTATC 8085 Query 97284 AAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTT 97343 |||| || ||||||| |||||||| |||||| | || || ||||||| || || Sbjct 8084 CGAAGCTCTAACTTGTGCACTGAAATTGTGGAGTACTCTTCGCCAGACGAGATTGCTGTC 8025 Query 97344 TGC 97346 ||| Sbjct 8024 TGC 8022 >seq481 Length=22500 Score = 118 bits (130), Expect = 2e-21 Identities = 234/341 (69%), Gaps = 18/341 (5%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||| || || ||||| | || ||| | |||||| Sbjct 2766 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCTTTCTGGACCGCAGAGGAGATTGATCTG 2707 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| || |||| ||| | | | | | ||| ||||| | || || || Sbjct 2706 TCTAAGGATCTTCACGACTGGAACAACAGACTCAATGACGACGAGCGTTACTTCATTTCC 2647 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| || | || ||||| || | ||||| |||||||||||||| || || || || || Sbjct 2646 CACGTTCTTGCATTCTTCGCTGCATCCGACGGAATCGTCAACGAGAACCTTGTCGAG-CG 2588 Query 125198 ATTCTCTCAAGAGTTGA---CCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATC 125252 ||| || | ||| ||| | ||||||| ||||| ||||||||||||||| Sbjct 2587 CTTC-----AGCGGTGAAGTCCAGATCCCAGAGGCACGATGCTTCTACGGATTCCAAATC 2533 Query 125253 ATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGAT 125312 ||||| |||||| | ||||| || | |||||| || || || | ||||| || Sbjct 2532 ATGATGGAGAACATCCACTCCGAGACATACTCTCTCCTCATCGATACATACATCAAGGAG 2473 Query 125313 C---CGCAACGTAAACACATGCTCTTTAACGCAATCGACAC 125350 | | ||||| | | || ||||| ||||| ||||| || Sbjct 2472 CAGGCTCAACGCACATAC---CTCTTCAACGCTATCGAGAC 2435 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 ||||| | ||| | |||||| | | || | | || || |||||||| || || ||| Sbjct 2338 TGGATTCAAGACAAGAAGTCTACCTTTGCTCAACGTCTTGTTGCATTCGCAGCTGTTGAG 2279 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 || |||||||| || ||| || ||| ||||||||||| | |||||||| || || ||| Sbjct 2278 GGTATCTTCTTCTCCGGTTCATTCGCGTCCATCTTTTGGTTGAAGAAGCGTGGTCTGATG 2219 Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTT 125570 |||| || || | || ||| | || || || || ||||| || ||| ||||| Sbjct 2218 GCCGGGCTTACTTTCTCCAATGAGCTCATCTCCCGTGATGAGGGTCTTCACACCGACTTC 2159 Query 125571 GC 125572 || Sbjct 2158 GC 2157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741027973617960