Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 125 1e-23
seq481 118 2e-21
>seq2637
Length=17558
Score = 125 bits (138), Expect = 1e-23
Identities = 319/483 (66%), Gaps = 2/483 (0%)
Strand=Plus/Minus
Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924
|||| ||| ||||| ||||| || || ||||| ||| | || ||||| | || || |
Sbjct 8503 GATATGTTGACCAGGGTGGCAACAAGCGCCCAGGTGCTTTCGCTATCTACCTCGAGCCAT 8444
Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984
||||||| || ||||| || | | || |||| || ||| ||| || || | |
Sbjct 8443 GGCACGCCGATGTTTTCGAGTACCTTGACCTGCGAAAGAACCACGGCAAGGAGGAAGTTC 8384
Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044
| || | || | || ||||| | ||| | || ||| | ||||||||||| ||| |
Sbjct 8383 GTGCTCGCGATCTCTTCTATGCCTTGTGGATTCCCGATCTATTCATGAAGCGTGTCGAGA 8324
Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104
| | | | |||| || ||||||||| | || || || || | ||| || |
Sbjct 8323 AGAACGCCGAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGCTTGGCTGATGTCTACG 8264
Query 97105 GCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGA 97163
| || ||||| ||||| |||| | |||||| | |||||| | || |||| |
Sbjct 8263 GTGATGAGTTCGAGGCTCTGTACGAGAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACTA 8204
Query 97164 GTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223
|| | || | | | || ||| | ||||| | |||||| ||||| |||| ||
Sbjct 8203 -TCAAGGCTCAAAAGCTTTGGTACTCCATCCTCGAGGCTCAAACCGAGACCGGAAACCCA 8145
Query 97224 TACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATC 97283
| ||| |||||||||||| | || || || |||||||| || | || || |||
Sbjct 8144 TTCATGCTCTACAAGGATGCATGCAACCGAAAGAGCAACCAGAAGAACCTTGGTACTATC 8085
Query 97284 AAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTT 97343
|||| || ||||||| |||||||| |||||| | || || ||||||| || ||
Sbjct 8084 CGAAGCTCTAACTTGTGCACTGAAATTGTGGAGTACTCTTCGCCAGACGAGATTGCTGTC 8025
Query 97344 TGC 97346
|||
Sbjct 8024 TGC 8022
>seq481
Length=22500
Score = 118 bits (130), Expect = 2e-21
Identities = 234/341 (69%), Gaps = 18/341 (5%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| ||||| |||| || || ||||| | || ||| | ||||||
Sbjct 2766 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCTTTCTGGACCGCAGAGGAGATTGATCTG 2707
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|| ||||| || |||| ||| | | | | | ||| ||||| | || || ||
Sbjct 2706 TCTAAGGATCTTCACGACTGGAACAACAGACTCAATGACGACGAGCGTTACTTCATTTCC 2647
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197
||| || | || ||||| || | ||||| |||||||||||||| || || || || ||
Sbjct 2646 CACGTTCTTGCATTCTTCGCTGCATCCGACGGAATCGTCAACGAGAACCTTGTCGAG-CG 2588
Query 125198 ATTCTCTCAAGAGTTGA---CCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATC 125252
||| || | ||| ||| | ||||||| ||||| |||||||||||||||
Sbjct 2587 CTTC-----AGCGGTGAAGTCCAGATCCCAGAGGCACGATGCTTCTACGGATTCCAAATC 2533
Query 125253 ATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGAT 125312
||||| |||||| | ||||| || | |||||| || || || | ||||| ||
Sbjct 2532 ATGATGGAGAACATCCACTCCGAGACATACTCTCTCCTCATCGATACATACATCAAGGAG 2473
Query 125313 C---CGCAACGTAAACACATGCTCTTTAACGCAATCGACAC 125350
| | ||||| | | || ||||| ||||| ||||| ||
Sbjct 2472 CAGGCTCAACGCACATAC---CTCTTCAACGCTATCGAGAC 2435
Score = 86.0 bits (94), Expect = 9e-12
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450
||||| | ||| | |||||| | | || | | || || |||||||| || || |||
Sbjct 2338 TGGATTCAAGACAAGAAGTCTACCTTTGCTCAACGTCTTGTTGCATTCGCAGCTGTTGAG 2279
Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510
|| |||||||| || ||| || ||| ||||||||||| | |||||||| || || |||
Sbjct 2278 GGTATCTTCTTCTCCGGTTCATTCGCGTCCATCTTTTGGTTGAAGAAGCGTGGTCTGATG 2219
Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTT 125570
|||| || || | || ||| | || || || || ||||| || ||| |||||
Sbjct 2218 GCCGGGCTTACTTTCTCCAATGAGCTCATCTCCCGTGATGAGGGTCTTCACACCGACTTC 2159
Query 125571 GC 125572
||
Sbjct 2158 GC 2157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741027973617960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |