Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2637 327 3e-84 seq481 89.7 1e-12 >seq2637 Length=17558 Score = 327 bits (362), Expect = 3e-84 Identities = 1166/1796 (65%), Gaps = 45/1796 (3%) Strand=Plus/Minus Query 363386 ATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTG 363445 ||||||| |||| ||||| | ||| ||| || || ||| || |||| | |||| Sbjct 8922 ATATTTT-GGATTCAAGACCCTTGAGCGATCATATCTCCTCCGTCTCGATGGCAAGATTG 8864 Query 363446 TTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTG 363505 ||| ||||| || |||||| | ||||| || || |||| ||||| | |||| | | Sbjct 8863 CTGAGCGCCCTCAACATATGATTATGCGCGTGGCGGTTGGCATCCACGGTGAGGATATCG 8804 Query 363506 ATGCCGCGATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGCC 363563 | || || ||||| ||||| || ||| | || | ||| ||||| || || | || Sbjct 8803 AGGCTGCTATTGAGACATACAA-CTTG-ATGTCAAGCAAGTACTTCACTCATGCATCACC 8746 Query 363564 AACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAAT 363623 ||| | | ||||| || | | | ||| | ||||| ||||| ||| | | || Sbjct 8745 CACACTCTTTGCCGCTGGTACGCCACAGGCTCAGCTTTCTTCATGCTTCCTTGTCGACAT 8686 Query 363624 GAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAA 363683 |||||| ||| ||| || || |||| ||||| || ||| ||||| | |||||||| Sbjct 8685 GAAGGAAGATAGCATTGACGGCATCTACGACACCCTCAAGGCCTGTGCCATGATTTCCAA 8626 Query 363684 GAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGT---TACA 363739 |||||| || || |||||| || ||||||| ||||||| || | || |||| Sbjct 8625 GAATGCGGGAGGTATTGGTCTAAACATCCACAGAATTCGTGCCACTG----GTGCCTACA 8570 Query 363740 TTCGC-GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAAT 363798 | ||| || || ||| |||| || || | ||||||||| | || || || |||| Sbjct 8569 T-CGCTGGTACCAACGGAAACTCCAACGGAATTGTTCCCATGTTGCGAGTCTTCAACAAC 8511 Query 363799 ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTC 363858 ||||| || || || ||||||||||| |||||| ||| || || ||||| || ||| Sbjct 8510 ACTGCTAGATATGTTGACCAGGGTGGCAACAAGCGCCCAGGTGCTTTCGCTATCTACCTC 8451 Query 363859 GAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAG 363918 ||||| || |||||| |||| |||| ||||| || || || ||| || || ||| Sbjct 8450 GAGCCATGGCACGCCGATGTTTTCGAGTACCTTGACCTGCGAAAGAACCACGGCAAGGAG 8391 Query 363919 GAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGC 363978 ||| | ||||| || ||||| |||||||| | ||| || | || | || |||||||| Sbjct 8390 GAAGTTCGTGCTCGCGATCTCTTCTATGCCTTGTGGATTCCCGATCTATTCATGAAGCGT 8331 Query 363979 GTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCG 364036 || ||| | | | | | ||| | || | ||||| | || || || || | | | Sbjct 8330 GTCGAG--AAGAACGCCGAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGCTTGGCTG 8273 Query 364037 ATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTC 364096 |||| | ||||| || | | ||||| ||||| ||||| || |||||| |||| || Sbjct 8272 ATGTCTACGGTGATGAGTTCGAGGCTCTGTACGAGAAGTACGAGAAGGAGGGCAAGGGTC 8213 Query 364097 GTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAG 364156 | ||||| || || || ||||| |||| ||||| | || | || | ||||| | Sbjct 8212 GCAAGACTATCAAGGCTCAAAAGCTTTGGTACTCCATCCTCGAGGCTCAAACCGAGACCG 8153 Query 364157 GAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTG 364216 ||| || | ||| | ||||| ||| | |||||||| ||| ||||||| || |||||| Sbjct 8152 GAAACCCATTCATGCTCTACAAGGATGCATGCAACCGAAAGAGCAACCAGAAGAACCTTG 8093 Query 364217 GTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAG 364275 |||| | || | || | ||| | || || || ||| | || ||| | | || |||||| Sbjct 8092 GTACTA-TCCGAAGCTCTAACTTGTGCACTGAAATTGTGGAGTACTCTTCGCCAGACGAG 8034 Query 364276 ACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTG------TAAAAGATGGT 364329 | ||| || || ||| | || || | ||||| ||| | | || | || | || Sbjct 8033 ATTGCTGTCTGCAACTTGGCCTCCCTTGCGCTCCCGACTTATGTTGACATGAACAACGGC 7974 Query 364330 ACTTTTGAC--CACCAGCATCTTTATGACGTAACCTATCATGCTACTTG----CAATCTC 364383 || | ||| ||| | || | || || || || | | ||| || | Sbjct 7973 ACATACGACTTTGCCA--AGCTCCACGAGGT---CTGCCAAG-TCGTTGTCAAGAACTTA 7920 Query 364384 GACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAG-CGTTCTAATATGCG 364442 |||| | ||||| | || || || ||| |||| | || |||| || || | || Sbjct 7919 AACAAAATCATCGATATCAACTACTACCCAGTTCCCG-AGGCGAGACGAAGCAACTTTCG 7861 Query 364443 TCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGAT 364502 ||| || || |||| ||||||| || || || || || | ||| || ||| | Sbjct 7860 TCACCGACCCATTGCCGTTGGTGTTCAAGGTCTTGCAGATGCTTTCTTGGCACTCCGTCT 7801 Query 364503 GGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTT 364562 |||| || || ||||| || || || | | ||||| || || || || Sbjct 7800 TCCATTCGACTCACCTGAGGCCAAGCACCTCAACATCCAAATCTTCGAGACCATCTACCA 7741 Query 364563 TGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGA 364622 || || |||| |||||| ||| | || || | | | || || || ||||| Sbjct 7740 CGCTGCTTTGACCGCTTCGATTGAGCTTGCCAAGATCGATGGTCCTTATGAGACATATGA 7681 Query 364623 GGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGT 364682 ||| || || ||| |||| | | || | ||| |||||| |||| || | | Sbjct 7680 GGGCTCTCCGGCATCGAAGGGTGAGCTTCAATATGACCTATGGGGCATCACCCCCACCGA 7621 Query 364683 CCGATGGAACTGGGATACGCTACGTTCCAAC--GTTAAGAAGCATGGTACTCGCAACTCC 364740 | ||| ||||||||| ||| | |||| | ||| | ||||||| |||||| Sbjct 7620 TCTCTGGGACTGGGATA-GCT-TGAAGCAACAGATCAAGCAACATGGTATCCGCAACAGT 7563 Query 364741 CTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGC 364800 | || || || ||||| || || || ||||| || || |||||||||| Sbjct 7562 TTGCTTGTCGCTCCTATGCCAACTGCCAGCACCAGTCAGATTCTTGGCTTCAACGAGTGC 7503 Query 364801 TTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTA 364860 || || || | || ||| |||| || ||||| || ||| | || || || | ||| Sbjct 7502 TTTGAGCCATACACTTCCAACATTTACTCTCGCCGTGTGCTTGCTGGCGAGTTCCAGGTC 7443 Query 364861 GTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAG 364920 || || | | | ||||| | || || || ||| ||||| ||||||| Sbjct 7442 GTCAACCCTTGGTTGTTGAAGGACTTGGTAGATATGGGCCTCTGGTCTGACAACATGAAG 7383 Query 364921 AACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTG 364980 ||| |||||||| | | ||||| | |||||||||||| | |||| ||| | Sbjct 7382 AACCGCATCATCGCTGATGGGGGTTCCATCCAGAACATTCCAAACATCCCAGCTGATATC 7323 Query 364981 AAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCC 365040 || || | ||||| ||||| ||||| || || |||||| | || | ||||| ||| Sbjct 7322 AAAGCTCTGTACAAGACCGTTTGGGAGATCTCTCAACGAACTATTGTTCAGATGGCAGCC 7263 Query 365041 GATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACC 365100 || || || || | ||| ||| ||||||| | ||| | ||||| | |||||| Sbjct 7262 GACCGTGGCGCATACATCGATCAATCCCAGTCGATGAACATCCACATGAAGGATCCAACC 7203 Query 365101 TCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | |||| | || |||||| ||| || ||||| | || | ||||| || Sbjct 7202 ATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGTTGGGATTGAAGACTGG 7147 >seq481 Length=22500 Score = 89.7 bits (98), Expect = 1e-12 Identities = 149/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAA---CAATGAACGTTCATTCGCG 22488 || ||||| ||||| || ||||| | | |||||| | ||| | | | || || Sbjct 2368 ATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATTCAAGACAAGAAGTCTACCTTTGCT 2309 Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||||| ||||||| || | ||||| || || ||||| || || |||| | Sbjct 2308 CAACGTCTTGTTGCATTCGCAGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCGTCC 2249 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 ||||||||| | || || |||| | ||| | || || || || || |||||| | || Sbjct 2248 ATCTTTTGGTTGAAGAAGCGTGGTCTGATGGCCGGGCTTACTTTCTCCAATGAGCTCATC 2189 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 ||| |||||||||||||| ||||| || || || Sbjct 2188 TCCCGTGATGAGGGTCTTCACACCGACTTCGCATG 2154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303297306936122