Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 327 3e-84
seq481 89.7 1e-12
>seq2637
Length=17558
Score = 327 bits (362), Expect = 3e-84
Identities = 1166/1796 (65%), Gaps = 45/1796 (3%)
Strand=Plus/Minus
Query 363386 ATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTG 363445
||||||| |||| ||||| | ||| ||| || || ||| || |||| | ||||
Sbjct 8922 ATATTTT-GGATTCAAGACCCTTGAGCGATCATATCTCCTCCGTCTCGATGGCAAGATTG 8864
Query 363446 TTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTG 363505
||| ||||| || |||||| | ||||| || || |||| ||||| | |||| | |
Sbjct 8863 CTGAGCGCCCTCAACATATGATTATGCGCGTGGCGGTTGGCATCCACGGTGAGGATATCG 8804
Query 363506 ATGCCGCGATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGCC 363563
| || || ||||| ||||| || ||| | || | ||| ||||| || || | ||
Sbjct 8803 AGGCTGCTATTGAGACATACAA-CTTG-ATGTCAAGCAAGTACTTCACTCATGCATCACC 8746
Query 363564 AACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAAT 363623
||| | | ||||| || | | | ||| | ||||| ||||| ||| | | ||
Sbjct 8745 CACACTCTTTGCCGCTGGTACGCCACAGGCTCAGCTTTCTTCATGCTTCCTTGTCGACAT 8686
Query 363624 GAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAA 363683
|||||| ||| ||| || || |||| ||||| || ||| ||||| | ||||||||
Sbjct 8685 GAAGGAAGATAGCATTGACGGCATCTACGACACCCTCAAGGCCTGTGCCATGATTTCCAA 8626
Query 363684 GAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGT---TACA 363739
|||||| || || |||||| || ||||||| ||||||| || | || ||||
Sbjct 8625 GAATGCGGGAGGTATTGGTCTAAACATCCACAGAATTCGTGCCACTG----GTGCCTACA 8570
Query 363740 TTCGC-GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAAT 363798
| ||| || || ||| |||| || || | ||||||||| | || || || ||||
Sbjct 8569 T-CGCTGGTACCAACGGAAACTCCAACGGAATTGTTCCCATGTTGCGAGTCTTCAACAAC 8511
Query 363799 ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTC 363858
||||| || || || ||||||||||| |||||| ||| || || ||||| || |||
Sbjct 8510 ACTGCTAGATATGTTGACCAGGGTGGCAACAAGCGCCCAGGTGCTTTCGCTATCTACCTC 8451
Query 363859 GAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAG 363918
||||| || |||||| |||| |||| ||||| || || || ||| || || |||
Sbjct 8450 GAGCCATGGCACGCCGATGTTTTCGAGTACCTTGACCTGCGAAAGAACCACGGCAAGGAG 8391
Query 363919 GAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGC 363978
||| | ||||| || ||||| |||||||| | ||| || | || | || ||||||||
Sbjct 8390 GAAGTTCGTGCTCGCGATCTCTTCTATGCCTTGTGGATTCCCGATCTATTCATGAAGCGT 8331
Query 363979 GTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCG 364036
|| ||| | | | | | ||| | || | ||||| | || || || || | | |
Sbjct 8330 GTCGAG--AAGAACGCCGAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGCTTGGCTG 8273
Query 364037 ATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTC 364096
|||| | ||||| || | | ||||| ||||| ||||| || |||||| |||| ||
Sbjct 8272 ATGTCTACGGTGATGAGTTCGAGGCTCTGTACGAGAAGTACGAGAAGGAGGGCAAGGGTC 8213
Query 364097 GTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAG 364156
| ||||| || || || ||||| |||| ||||| | || | || | ||||| |
Sbjct 8212 GCAAGACTATCAAGGCTCAAAAGCTTTGGTACTCCATCCTCGAGGCTCAAACCGAGACCG 8153
Query 364157 GAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTG 364216
||| || | ||| | ||||| ||| | |||||||| ||| ||||||| || ||||||
Sbjct 8152 GAAACCCATTCATGCTCTACAAGGATGCATGCAACCGAAAGAGCAACCAGAAGAACCTTG 8093
Query 364217 GTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAG 364275
|||| | || | || | ||| | || || || ||| | || ||| | | || ||||||
Sbjct 8092 GTACTA-TCCGAAGCTCTAACTTGTGCACTGAAATTGTGGAGTACTCTTCGCCAGACGAG 8034
Query 364276 ACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTG------TAAAAGATGGT 364329
| ||| || || ||| | || || | ||||| ||| | | || | || | ||
Sbjct 8033 ATTGCTGTCTGCAACTTGGCCTCCCTTGCGCTCCCGACTTATGTTGACATGAACAACGGC 7974
Query 364330 ACTTTTGAC--CACCAGCATCTTTATGACGTAACCTATCATGCTACTTG----CAATCTC 364383
|| | ||| ||| | || | || || || || | | ||| || |
Sbjct 7973 ACATACGACTTTGCCA--AGCTCCACGAGGT---CTGCCAAG-TCGTTGTCAAGAACTTA 7920
Query 364384 GACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAG-CGTTCTAATATGCG 364442
|||| | ||||| | || || || ||| |||| | || |||| || || | ||
Sbjct 7919 AACAAAATCATCGATATCAACTACTACCCAGTTCCCG-AGGCGAGACGAAGCAACTTTCG 7861
Query 364443 TCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGAT 364502
||| || || |||| ||||||| || || || || || | ||| || ||| |
Sbjct 7860 TCACCGACCCATTGCCGTTGGTGTTCAAGGTCTTGCAGATGCTTTCTTGGCACTCCGTCT 7801
Query 364503 GGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTT 364562
|||| || || ||||| || || || | | ||||| || || || ||
Sbjct 7800 TCCATTCGACTCACCTGAGGCCAAGCACCTCAACATCCAAATCTTCGAGACCATCTACCA 7741
Query 364563 TGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGA 364622
|| || |||| |||||| ||| | || || | | | || || || |||||
Sbjct 7740 CGCTGCTTTGACCGCTTCGATTGAGCTTGCCAAGATCGATGGTCCTTATGAGACATATGA 7681
Query 364623 GGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGT 364682
||| || || ||| |||| | | || | ||| |||||| |||| || | |
Sbjct 7680 GGGCTCTCCGGCATCGAAGGGTGAGCTTCAATATGACCTATGGGGCATCACCCCCACCGA 7621
Query 364683 CCGATGGAACTGGGATACGCTACGTTCCAAC--GTTAAGAAGCATGGTACTCGCAACTCC 364740
| ||| ||||||||| ||| | |||| | ||| | ||||||| ||||||
Sbjct 7620 TCTCTGGGACTGGGATA-GCT-TGAAGCAACAGATCAAGCAACATGGTATCCGCAACAGT 7563
Query 364741 CTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGC 364800
| || || || ||||| || || || ||||| || || ||||||||||
Sbjct 7562 TTGCTTGTCGCTCCTATGCCAACTGCCAGCACCAGTCAGATTCTTGGCTTCAACGAGTGC 7503
Query 364801 TTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTA 364860
|| || || | || ||| |||| || ||||| || ||| | || || || | |||
Sbjct 7502 TTTGAGCCATACACTTCCAACATTTACTCTCGCCGTGTGCTTGCTGGCGAGTTCCAGGTC 7443
Query 364861 GTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAG 364920
|| || | | | ||||| | || || || ||| ||||| |||||||
Sbjct 7442 GTCAACCCTTGGTTGTTGAAGGACTTGGTAGATATGGGCCTCTGGTCTGACAACATGAAG 7383
Query 364921 AACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTG 364980
||| |||||||| | | ||||| | |||||||||||| | |||| ||| |
Sbjct 7382 AACCGCATCATCGCTGATGGGGGTTCCATCCAGAACATTCCAAACATCCCAGCTGATATC 7323
Query 364981 AAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCC 365040
|| || | ||||| ||||| ||||| || || |||||| | || | ||||| |||
Sbjct 7322 AAAGCTCTGTACAAGACCGTTTGGGAGATCTCTCAACGAACTATTGTTCAGATGGCAGCC 7263
Query 365041 GATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACC 365100
|| || || || | ||| ||| ||||||| | ||| | ||||| | ||||||
Sbjct 7262 GACCGTGGCGCATACATCGATCAATCCCAGTCGATGAACATCCACATGAAGGATCCAACC 7203
Query 365101 TCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156
| |||| | || |||||| ||| || ||||| | || | ||||| ||
Sbjct 7202 ATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGTTGGGATTGAAGACTGG 7147
>seq481
Length=22500
Score = 89.7 bits (98), Expect = 1e-12
Identities = 149/215 (69%), Gaps = 3/215 (1%)
Strand=Plus/Minus
Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAA---CAATGAACGTTCATTCGCG 22488
|| ||||| ||||| || ||||| | | |||||| | ||| | | | || ||
Sbjct 2368 ATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATTCAAGACAAGAAGTCTACCTTTGCT 2309
Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548
|||||||| ||||||| || | ||||| || || ||||| || || |||| |
Sbjct 2308 CAACGTCTTGTTGCATTCGCAGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCGTCC 2249
Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608
||||||||| | || || |||| | ||| | || || || || || |||||| | ||
Sbjct 2248 ATCTTTTGGTTGAAGAAGCGTGGTCTGATGGCCGGGCTTACTTTCTCCAATGAGCTCATC 2189
Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643
||| |||||||||||||| ||||| || || ||
Sbjct 2188 TCCCGTGATGAGGGTCTTCACACCGACTTCGCATG 2154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303297306936122
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |