Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 107 2e-18
seq507 93.3 4e-14
seq332 84.2 2e-11
>seq2637
Length=17558
Score = 107 bits (118), Expect = 2e-18
Identities = 291/437 (67%), Gaps = 9/437 (2%)
Strand=Plus/Plus
Query 133199 AAAATGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCCTTTCC---TTTTACCT 133255
|||| || || ||||| ||||||| || | || ||||| ||| | | || ||
Sbjct 8428 AAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCGAAAGCACCTGGGCGCTTGTTGCCA 8487
Query 133256 CCCTGATCCACATGTCTAAGCA-TGCTGTTGAAGACACGCAATGCAGGACCCAATCCTGC 133314
||||| || |||| |||| ||| || |||||||||| ||||| ||| | | |||
Sbjct 8488 CCCTGGTCAACATATCTA-GCAGTGTTGTTGAAGACTCGCAACATGGGAACAATTCCGTT 8546
Query 133315 GGCAGTACCGTTGGTGGATTTGATTTTACTGTTAGCGGCACGAATT-TGAGAAACGTTAA 133373
|| | |||||||| ||| | || |||||||||| || | | ||| |
Sbjct 8547 GGAGTTTCCGTTGGTACCAGCGATGTAGGCACCAGTGGCACGAATTCTGTGGAT-GTTTA 8605
Query 133374 GGCCTATACCGCCTCCGTGTTTAGATATCATGGCACAATCGTTGAGAGTTTTATAGATGC 133433
| || ||||| || | | || || ||||||||||| | ||||| || | |||||||
Sbjct 8606 GACCAATACCTCCCGCATTCTTGGAAATCATGGCACAGGCCTTGAGGGTGTCGTAGATGC 8665
Query 133434 CATTGATGCTGTCTTCCTGGATGTTGAGCAAATAA-CACGACGACATCTGAGGCATTTTC 133492
| | ||||| ||||||| |||| || ||| || || || || | ||||| | | |
Sbjct 8666 CGTCAATGCTATCTTCCTTCATGTCGA-CAAGGAAGCATGAAGAAAGCTGAGCCTGTGGC 8724
Query 133493 ATGCCAGAAGAAAACAAAGTGGGACTAGCGTGAGTAAACAGCTTTGATCGCATCAATCTG 133552
| |||| | ||| | ||||| || ||||| || ||| | |||||| ||
Sbjct 8725 GTACCAGCGGCAAAGAGTGTGGGTGATGCATGAGTGAAGTACTTGCTTGACATCAAGTTG 8784
Query 133553 TAGGACTCAATTGCGCTTTCAATGTCTTCACCATGAATTTGTAGCGCTACACGCATCAGC 133612
|| | |||||| || || || || ||||| || || | ||| || ||||| | |
Sbjct 8785 TATGTCTCAATAGCAGCCTCGATATCCTCACCGTGGATGCCAACCGCCACGCGCATAATC 8844
Query 133613 ATATGTTGAGGTCGCTC 133629
||||||||||| |||||
Sbjct 8845 ATATGTTGAGGGCGCTC 8861
>seq507
Length=44608
Score = 93.3 bits (102), Expect = 4e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 24009 ACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTC 24068
||| |||| || || |||| ||| | || || ||| ||| |||||||||||| | |||
Sbjct 34710 ACAGTAACGGGCAAGACGATCACCCTTGAGGTGGAGTCCAGCGACACCATCGACAATGTC 34651
Query 24069 AAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGC 24128
|| ||||| ||||| || ||||| || || || || ||| | ||||| | || |
Sbjct 34650 AAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCC 34591
Query 24129 GGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187
|||||||||||||| |||| | | | || ||| || ||||| || || || || ||
Sbjct 34590 GGCAAGCAACTCGAGGATGGCCGTACTCTCTCCGACTACAACATCCAGAAGGAGTCCAC 34532
>seq332
Length=18159
Score = 84.2 bits (92), Expect = 2e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074
||||| || | || ||| | ||||||||| ||| |||||||||||| | |||||
Sbjct 2729 ACTGGCAAGACCATCACCCTTGAAGTCGAGTCCAGCGACACCATCGATAATGTCAAGTCC 2670
Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134
|||||| ||||| || || || ||||| || ||||| | ||||| | || ||||||
Sbjct 2669 AAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAACAACGCCTGATCTTCGCTGGCAAG 2610
Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCA 24193
|| ||||| || | | | || || || |||||||| || || || || ||||
Sbjct 2609 CAGCTCGAGGACGGTCGCACTCTCTCTGACTACAACATTCAGAAGGAGTCCACTCTTCA 2551
Score = 82.4 bits (90), Expect = 7e-11
Identities = 119/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086
|| ||| | || || ||| ||| ||| |||||||| | || || |||||| |||
Sbjct 2434 ATCACCCTTGAGGTTGAGTCCAGCGATACCATCGACAATGTTAAGTCCAAGATTCAGGAC 2375
Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146
|| || ||||| ||||| || || || | |||||| || |||||||||||| || ||
Sbjct 2374 AAGGAGGGCATTCCTCCTGACCAGCAACGTTTGATTTTCGCCGGCAAGCAACTTGAGGAC 2315
Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194
| | | | | || ||| |||||||| || || || || || |||||
Sbjct 2314 GGCCGCACCCTCTCCGACTATAACATCCAGAAGGAGTCCACCCTTCAT 2267
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429918336482505
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |