Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2637 107 2e-18 seq507 93.3 4e-14 seq332 84.2 2e-11 >seq2637 Length=17558 Score = 107 bits (118), Expect = 2e-18 Identities = 291/437 (67%), Gaps = 9/437 (2%) Strand=Plus/Plus Query 133199 AAAATGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCCTTTCC---TTTTACCT 133255 |||| || || ||||| ||||||| || | || ||||| ||| | | || || Sbjct 8428 AAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCGAAAGCACCTGGGCGCTTGTTGCCA 8487 Query 133256 CCCTGATCCACATGTCTAAGCA-TGCTGTTGAAGACACGCAATGCAGGACCCAATCCTGC 133314 ||||| || |||| |||| ||| || |||||||||| ||||| ||| | | ||| Sbjct 8488 CCCTGGTCAACATATCTA-GCAGTGTTGTTGAAGACTCGCAACATGGGAACAATTCCGTT 8546 Query 133315 GGCAGTACCGTTGGTGGATTTGATTTTACTGTTAGCGGCACGAATT-TGAGAAACGTTAA 133373 || | |||||||| ||| | || |||||||||| || | | ||| | Sbjct 8547 GGAGTTTCCGTTGGTACCAGCGATGTAGGCACCAGTGGCACGAATTCTGTGGAT-GTTTA 8605 Query 133374 GGCCTATACCGCCTCCGTGTTTAGATATCATGGCACAATCGTTGAGAGTTTTATAGATGC 133433 | || ||||| || | | || || ||||||||||| | ||||| || | ||||||| Sbjct 8606 GACCAATACCTCCCGCATTCTTGGAAATCATGGCACAGGCCTTGAGGGTGTCGTAGATGC 8665 Query 133434 CATTGATGCTGTCTTCCTGGATGTTGAGCAAATAA-CACGACGACATCTGAGGCATTTTC 133492 | | ||||| ||||||| |||| || ||| || || || || | ||||| | | | Sbjct 8666 CGTCAATGCTATCTTCCTTCATGTCGA-CAAGGAAGCATGAAGAAAGCTGAGCCTGTGGC 8724 Query 133493 ATGCCAGAAGAAAACAAAGTGGGACTAGCGTGAGTAAACAGCTTTGATCGCATCAATCTG 133552 | |||| | ||| | ||||| || ||||| || ||| | |||||| || Sbjct 8725 GTACCAGCGGCAAAGAGTGTGGGTGATGCATGAGTGAAGTACTTGCTTGACATCAAGTTG 8784 Query 133553 TAGGACTCAATTGCGCTTTCAATGTCTTCACCATGAATTTGTAGCGCTACACGCATCAGC 133612 || | |||||| || || || || ||||| || || | ||| || ||||| | | Sbjct 8785 TATGTCTCAATAGCAGCCTCGATATCCTCACCGTGGATGCCAACCGCCACGCGCATAATC 8844 Query 133613 ATATGTTGAGGTCGCTC 133629 ||||||||||| ||||| Sbjct 8845 ATATGTTGAGGGCGCTC 8861 >seq507 Length=44608 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 24009 ACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTC 24068 ||| |||| || || |||| ||| | || || ||| ||| |||||||||||| | ||| Sbjct 34710 ACAGTAACGGGCAAGACGATCACCCTTGAGGTGGAGTCCAGCGACACCATCGACAATGTC 34651 Query 24069 AAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGC 24128 || ||||| ||||| || ||||| || || || || ||| | ||||| | || | Sbjct 34650 AAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCC 34591 Query 24129 GGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 |||||||||||||| |||| | | | || ||| || ||||| || || || || || Sbjct 34590 GGCAAGCAACTCGAGGATGGCCGTACTCTCTCCGACTACAACATCCAGAAGGAGTCCAC 34532 >seq332 Length=18159 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 ||||| || | || ||| | ||||||||| ||| |||||||||||| | ||||| Sbjct 2729 ACTGGCAAGACCATCACCCTTGAAGTCGAGTCCAGCGACACCATCGATAATGTCAAGTCC 2670 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 |||||| ||||| || || || ||||| || ||||| | ||||| | || |||||| Sbjct 2669 AAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAACAACGCCTGATCTTCGCTGGCAAG 2610 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCA 24193 || ||||| || | | | || || || |||||||| || || || || |||| Sbjct 2609 CAGCTCGAGGACGGTCGCACTCTCTCTGACTACAACATTCAGAAGGAGTCCACTCTTCA 2551 Score = 82.4 bits (90), Expect = 7e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 || ||| | || || ||| ||| ||| |||||||| | || || |||||| ||| Sbjct 2434 ATCACCCTTGAGGTTGAGTCCAGCGATACCATCGACAATGTTAAGTCCAAGATTCAGGAC 2375 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 || || ||||| ||||| || || || | |||||| || |||||||||||| || || Sbjct 2374 AAGGAGGGCATTCCTCCTGACCAGCAACGTTTGATTTTCGCCGGCAAGCAACTTGAGGAC 2315 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 | | | | | || ||| |||||||| || || || || || ||||| Sbjct 2314 GGCCGCACCCTCTCCGACTATAACATCCAGAAGGAGTCCACCCTTCAT 2267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429918336482505