Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq332 111 1e-19 seq507 96.9 3e-15 >seq332 Length=18159 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || ||||||||||| ||||||||||||||| Sbjct 1788 CCACCACGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCTC 1847 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || || |||| | ||||||||||| || ||| Sbjct 1848 AACGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGGG 1907 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||| || || || ||| | | || ||||| | || | || || | |||||||| Sbjct 1908 ATTCCCTCCTTATC-CTGAATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGACTCGAC 1966 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || || | ||| || || || || ||||| Sbjct 1967 TTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTAACAAAGATTTGCAT 2014 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || || || | || ||||||||||| |||||||| ||| | Sbjct 2016 CCACCGCGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAC 2075 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| || ||||| || || | || | ||||||||| ||||| || Sbjct 2076 AAGGTACGGCCATCCTCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGGGA 2135 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || || ||| ||| | | || | ||||| | |||||| | Sbjct 2136 ATGCCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCAACT 2195 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| || || || ||||| |||||||| Sbjct 2196 TCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| ||||||||||| || | ||||| |||||| ||||||||||| Sbjct 2557 GTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCA 2616 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| | || || ||||||||||| || || || ||||| || || |||| Sbjct 2617 GCGAAGATCAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTG 2676 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210 | | || | || ||| ||||||||| || | ||| | ||| || || || Sbjct 2677 ACATTATCGATGGTGTCGCTGGACTCGACTTCAAGGGTGATGGTCTTGCCAGT 2729 >seq507 Length=44608 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 130998 TCACCATGAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTT 131057 ||||||| |||||||| | || || || || || | ||| |||||||| || ||||| Sbjct 34494 TCACCATA--CCACCGCGAAGGCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTT 34551 Query 131058 GTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTG 131117 ||| ||| | || || ||||| || |||||||| ||| |||| | |||||||| Sbjct 34552 GTAGTCGGAGAGAGTACGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTG 34611 Query 131118 GTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGT 131177 |||||| ||||| || || ||||| ||| || ||||| | || | || ||| | Sbjct 34612 GTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCT 34671 Query 131178 GGACTCGATGTCGACGGTAACGGTTTTACCGGTTA 131212 |||||| | || | ||| | || || || |||| Sbjct 34672 GGACTCCACCTCAAGGGTGATCGTCTTGCCCGTTA 34706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471992910560640