Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq332 98.7 8e-16 >seq332 Length=18159 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || ||||||||||| ||||||||||||| || ||| | | ||| Sbjct 2031 AGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCC 2090 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||| || |||||| |||| || ||||| || ||| || | |||||| || || Sbjct 2091 TCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCT 2150 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | | ||| || | | | | || || || ||| ||| | ||||| || Sbjct 2151 TGAATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCAACTTCAAGAGTGATAGTC 2210 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || ||||| || |||||||| Sbjct 2211 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||||||||| || ||||| ||||||| | ||| | ||||| Sbjct 2259 AGAACGAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCGTCC 2318 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||| ||||| || |||| | || || ||||| ||| | |||||| ||||| Sbjct 2319 TCAAGTTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 2378 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||| || | | | | || |||| || ||| || | ||||||||| Sbjct 2379 TGAATCTTGGACTTAACATTGTCGATGGTATCGCTGGACTCAACCTCAAGGGTGATGGTC 2438 Query 16904 TTTCCGGTCAGCGTTTTGAC 16923 || ||||| || || ||||| Sbjct 2439 TTGCCGGTGAGGGTCTTGAC 2458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405071357339290