Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq481 107 2e-18 >seq481 Length=22500 Score = 107 bits (118), Expect = 2e-18 Identities = 224/333 (67%), Gaps = 3/333 (1%) Strand=Plus/Plus Query 93316 TGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGAT 93375 ||| ||||||||||| || ||||| || | || || |||||||||||||| Sbjct 2434 TGTCTCGATAGCGTTGAAGAGGTATGTGCGTTGAGCCTGCTCCTTGATGTATGTATCGAT 2493 Query 93376 TAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA 93435 | ||||| || | || || |||| |||||||| ||||||||||||||||| || Sbjct 2494 GAGGAGAGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAATCCGTAGAAGCA 2553 Query 93436 TCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTAT 93495 || || || | |||||| ||||| || | ||| || || || || ||||| || Sbjct 2554 TCGTGCCTCTGGGATCTGGACTTCACCGCTGAAGCGCTCGACAAGGTTCTCGTTGACGAT 2613 Query 93496 ACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT 93555 || |||||||| || || || || | | || || || | ||| || || || Sbjct 2614 TCCGTCGGATGCAGCGAAGAATGCAAGAACGTGGGAAATGAAGTAACGCTCGTCGTCATT 2673 Query 93556 AAG---CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAA 93612 || || | ||| ||| ||||| || || ||||| | || || | ||||| || Sbjct 2674 GAGTCTGTTGTTCCAGTCGTGAAGATCCTTAGACAGATCAATCTCCTCTGCGGTCCAGAA 2733 Query 93613 CGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 ||||| || || || |||||||| | ||| || Sbjct 2734 AGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 2766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556837335278040