Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq481 107 2e-18
>seq481
Length=22500
Score = 107 bits (118), Expect = 2e-18
Identities = 224/333 (67%), Gaps = 3/333 (1%)
Strand=Plus/Plus
Query 93316 TGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGAT 93375
||| ||||||||||| || ||||| || | || || ||||||||||||||
Sbjct 2434 TGTCTCGATAGCGTTGAAGAGGTATGTGCGTTGAGCCTGCTCCTTGATGTATGTATCGAT 2493
Query 93376 TAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA 93435
| ||||| || | || || |||| |||||||| ||||||||||||||||| ||
Sbjct 2494 GAGGAGAGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAATCCGTAGAAGCA 2553
Query 93436 TCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTAT 93495
|| || || | |||||| ||||| || | ||| || || || || ||||| ||
Sbjct 2554 TCGTGCCTCTGGGATCTGGACTTCACCGCTGAAGCGCTCGACAAGGTTCTCGTTGACGAT 2613
Query 93496 ACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT 93555
|| |||||||| || || || || | | || || || | ||| || || ||
Sbjct 2614 TCCGTCGGATGCAGCGAAGAATGCAAGAACGTGGGAAATGAAGTAACGCTCGTCGTCATT 2673
Query 93556 AAG---CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAA 93612
|| || | ||| ||| ||||| || || ||||| | || || | ||||| ||
Sbjct 2674 GAGTCTGTTGTTCCAGTCGTGAAGATCCTTAGACAGATCAATCTCCTCTGCGGTCCAGAA 2733
Query 93613 CGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645
||||| || || || |||||||| | ||| ||
Sbjct 2734 AGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 2766
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556837335278040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |