Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq1061 87.8 4e-12
seq1751 86.0 1e-11
>seq1061
Length=149956
Score = 87.8 bits (96), Expect = 4e-12
Identities = 94/122 (77%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760
||||||| || || | |||||||||||||| ||| ||||| | ||| | | ||
Sbjct 12579 CTCACTCCCGTATGCTGGGTCTTTCTGGAGGTCAGCGTGTCAAGGTCGTCCTTGCTGCTT 12520
Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820
|||| |||||| | |||||| |||||||||| ||||||||||| ||||| ||||| ||
Sbjct 12519 GCTC-GTGGCAGCGACCTCACTTGATCGTTCTTGACGAGCCTACTAACTACCTGGATCGT 12461
Query 280821 GA 280822
||
Sbjct 12460 GA 12459
>seq1751
Length=39631
Score = 86.0 bits (94), Expect = 1e-11
Identities = 277/430 (64%), Gaps = 0/430 (0%)
Strand=Plus/Plus
Query 87691 GCCATCGTCCAGACCCCCCAGTTCTTTGAGGTGCGTCCAGACCAGACTTGGGTAGAGCGT 87750
|||||| |||| | || |||||||| || | ||| ||||||||||| ||||
Sbjct 25477 GCCATCATCCAAAGTCCACAGTTCTTCCGAGTCAGAAAAGATCAGACTTGGGTCGAGCAG 25536
Query 87751 GCTGCAGGTTCTGTCCAGGAACTGTTCTACCGCTTCATCCAGGTGTCTCGCGAATCATTT 87810
| ||| || | | || || || |||||||| || || | || |||| | |
Sbjct 25537 GGTGCTGGCGGTATTCAAGAGCTCTTCTACCGAGTCGTCGAAGTTAATCGCAACCGCTGG 25596
Query 87811 GGCGCTGCAGTGTGCGTGGGTACTTGTGCTATGTATCGTCGCGAGGCCCTGGTGCCATTT 87870
|| ||| | | ||||| |||| ||| |||| || || | ||||| | | | |
Sbjct 25597 GGTGCTTCCATCTGCGTCGGTAGCAATGCCGTGTACCGCCGAGCAGCCCTCGAGGAAGTC 25656
Query 87871 GGCGGCACTGCTGAAATCGGTTTCAGCGAGGATGTCCACACCGGTTTCTCTGTTGTTGAC 87930
|| || || || || ||||||||| || ||||| |||||||| |||| | ||| ||
Sbjct 25657 GGTGGTACAGCGGAGATCGGTTTCTCAGAAGATGTGCACACCGGGTTCTACGCTGTGAAC 25716
Query 87931 GCTGGGTGGAAGCTGAAGTATGTGCCTCTGAACCTGGCCAAGGGTGTCTGTCCCTACGAG 87990
||| ||||| | || || || ||||| ||| ||| |||||||| || ||
Sbjct 25717 CGTGGCTGGAAAGTCAAATACGTCCCTCTCTGCCTCGCCTGCGGTGTCTGCCCTGACACA 25776
Query 87991 CTGAAATCATTCTTTAGCCAACAGTATCGCTGGGCCCTTGGCTCTACAACCCTTTGCTTC 88050
| | | ||||| ||| || |||||| | | ||||| || ||||| | |
Sbjct 25777 CCTCACGCCTTCTTCTCCCAGCAAATGCGCTGGTGCATGGGCTCCACTACCCTCCTCACC 25836
Query 88051 AATCCCCATTTCTGGAAGTCTGCCCTGTCTCTGCGCCAAAAAGTATGCTTCCTTTCCGGC 88110
|| ||| | |||||| || || ||| |||||| | |||| | | ||||||
Sbjct 25837 AACCCCGACTTCTGGCGCTCGAAACTCAGTCTCGTCCAAAAGCTCTGCTACATGTCCGGC 25896
Query 88111 ATGCTCTACT 88120
||| | ||||
Sbjct 25897 ATGATGTACT 25906
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027792406765011
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |