Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1061 87.8 4e-12 seq1751 86.0 1e-11 >seq1061 Length=149956 Score = 87.8 bits (96), Expect = 4e-12 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| || || | |||||||||||||| ||| ||||| | ||| | | || Sbjct 12579 CTCACTCCCGTATGCTGGGTCTTTCTGGAGGTCAGCGTGTCAAGGTCGTCCTTGCTGCTT 12520 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 |||| |||||| | |||||| |||||||||| ||||||||||| ||||| ||||| || Sbjct 12519 GCTC-GTGGCAGCGACCTCACTTGATCGTTCTTGACGAGCCTACTAACTACCTGGATCGT 12461 Query 280821 GA 280822 || Sbjct 12460 GA 12459 >seq1751 Length=39631 Score = 86.0 bits (94), Expect = 1e-11 Identities = 277/430 (64%), Gaps = 0/430 (0%) Strand=Plus/Plus Query 87691 GCCATCGTCCAGACCCCCCAGTTCTTTGAGGTGCGTCCAGACCAGACTTGGGTAGAGCGT 87750 |||||| |||| | || |||||||| || | ||| ||||||||||| |||| Sbjct 25477 GCCATCATCCAAAGTCCACAGTTCTTCCGAGTCAGAAAAGATCAGACTTGGGTCGAGCAG 25536 Query 87751 GCTGCAGGTTCTGTCCAGGAACTGTTCTACCGCTTCATCCAGGTGTCTCGCGAATCATTT 87810 | ||| || | | || || || |||||||| || || | || |||| | | Sbjct 25537 GGTGCTGGCGGTATTCAAGAGCTCTTCTACCGAGTCGTCGAAGTTAATCGCAACCGCTGG 25596 Query 87811 GGCGCTGCAGTGTGCGTGGGTACTTGTGCTATGTATCGTCGCGAGGCCCTGGTGCCATTT 87870 || ||| | | ||||| |||| ||| |||| || || | ||||| | | | | Sbjct 25597 GGTGCTTCCATCTGCGTCGGTAGCAATGCCGTGTACCGCCGAGCAGCCCTCGAGGAAGTC 25656 Query 87871 GGCGGCACTGCTGAAATCGGTTTCAGCGAGGATGTCCACACCGGTTTCTCTGTTGTTGAC 87930 || || || || || ||||||||| || ||||| |||||||| |||| | ||| || Sbjct 25657 GGTGGTACAGCGGAGATCGGTTTCTCAGAAGATGTGCACACCGGGTTCTACGCTGTGAAC 25716 Query 87931 GCTGGGTGGAAGCTGAAGTATGTGCCTCTGAACCTGGCCAAGGGTGTCTGTCCCTACGAG 87990 ||| ||||| | || || || ||||| ||| ||| |||||||| || || Sbjct 25717 CGTGGCTGGAAAGTCAAATACGTCCCTCTCTGCCTCGCCTGCGGTGTCTGCCCTGACACA 25776 Query 87991 CTGAAATCATTCTTTAGCCAACAGTATCGCTGGGCCCTTGGCTCTACAACCCTTTGCTTC 88050 | | | ||||| ||| || |||||| | | ||||| || ||||| | | Sbjct 25777 CCTCACGCCTTCTTCTCCCAGCAAATGCGCTGGTGCATGGGCTCCACTACCCTCCTCACC 25836 Query 88051 AATCCCCATTTCTGGAAGTCTGCCCTGTCTCTGCGCCAAAAAGTATGCTTCCTTTCCGGC 88110 || ||| | |||||| || || ||| |||||| | |||| | | |||||| Sbjct 25837 AACCCCGACTTCTGGCGCTCGAAACTCAGTCTCGTCCAAAAGCTCTGCTACATGTCCGGC 25896 Query 88111 ATGCTCTACT 88120 ||| | |||| Sbjct 25897 ATGATGTACT 25906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027792406765011