Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq332 167 4e-36 seq507 150 3e-31 seq1884 129 1e-24 seq1751 120 6e-22 >seq332 Length=18159 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | |||||||| || || ||||| ||||||||||| || ||||| Sbjct 2016 CCACCGCGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAC 2075 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | ||||| || || || ||||| | || || || || ||| Sbjct 2076 AAGGTACGGCCATCCTCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGGGA 2135 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| ||||||||||| | ||| ||| |||||||| |||| || || ||| Sbjct 2136 ATGCCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCAACT 2195 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || || ||||||||||||||||| |||||||| Sbjct 2196 TCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242 Score = 149 bits (164), Expect = 1e-30 Identities = 151/194 (78%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || |||||||| || ||||||||||| |||||||| || | || || || | ||| Sbjct 2268 TGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGC 2327 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || |||||||| || | | ||| ||||| || |||||||| |||||||| |||||||| Sbjct 2328 TTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTG 2387 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | ||| || |||||||| || ||| || || || || | ||||||||| || || || Sbjct 2388 GACTTAACATTGTCGATGGTATC-GCTGGACTCAACCTCAAGGGTGATGGTCTTGCCGGT 2446 Query 68438 GAGGGTCTTGACGA 68451 |||||||||||||| Sbjct 2447 GAGGGTCTTGACGA 2460 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| ||||||||||| |||||| Sbjct 1788 CCACCACGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCTC 1847 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||| || || || || |||| || ||||| ||||| Sbjct 1848 AACGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGGG 1907 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||||| ||||||| || || ||||| | || || ||| Sbjct 1908 ATTCCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGACTCGACT 1967 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || || ||||| | ||||| || || || ||||| Sbjct 1968 TCCAATGTAATAGTCTTGCCCGTCAAAGTCTTAACAAAGATTTGCAT 2014 Score = 136 bits (150), Expect = 7e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || |||||||| || || ||||| || || ||| Sbjct 2527 CCGCCACGAAGACGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAG 2586 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | ||||||||| || ||| Sbjct 2587 AGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCCGGAGGA 2646 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || || |||||||| |||||||| | |||||| ||||||||||| ||| || || || Sbjct 2647 ATACCCTCCTTGTCCTGAATCTTGGACTTGACATTATCGATGGTGTC-GCTGGACTCGAC 2705 Query 68414 TTCCAAGGTGATGGTTTTTCCCGT 68437 ||| | ||||||||| || || || Sbjct 2706 TTCAAGGGTGATGGTCTTGCCAGT 2729 >seq507 Length=44608 Score = 150 bits (166), Expect = 3e-31 Identities = 168/222 (76%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||||||||| | |||||||| || |||||||| || |||||||| || |||||| Sbjct 34502 CCACCGCGAAGGCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 34561 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| |||||||| || || | || ||||| || || Sbjct 34562 AGAGTACGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 34621 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| | |||||| ||||||||||| ||| || || || Sbjct 34622 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTC-GCTGGACTCCAC 34680 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATAT 68455 || | |||||| || || ||||| | || || |||||| Sbjct 34681 CTCAAGGGTGATCGTCTTGCCCGTTACTGTAGAGATGAATAT 34722 >seq1884 Length=68653 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || || || || || | ||||| || | ||||| |||||||| || Sbjct 46978 TTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATC 47037 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 |||| || ||||| || |||||||| ||||| || || ||||| | |||||| ||| Sbjct 47038 AGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCG 47097 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| | ||| || || ||||| |||||||| || || || || ||||||||||| Sbjct 47098 ATCGTGTCGGATGACTCGACCTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTGACGAA 47156 >seq1751 Length=39631 Score = 120 bits (132), Expect = 6e-22 Identities = 341/519 (66%), Gaps = 4/519 (1%) Strand=Plus/Minus Query 59091 AGTAGAGCATGCCGGACAGGAAGCAGGCCTTTTGGCGGAAGCTCAGATTGGACTTCCAGA 59150 |||| | ||||||||||| | ||||| ||||||| || || || || || ||||| Sbjct 25906 AGTACATCATGCCGGACATGTAGCAGAGCTTTTGGACGAGACTGAGTTTCGAGCGCCAGA 25847 Query 59151 AGTGGGGGTTGGTGCACAGAGTCGTGGAACCCAGCGCCCAACGGTATTGCTGGCTGAAGA 59210 ||| |||||||||| || || ||||| |||| ||| || ||||||| ||||| Sbjct 25846 AGTCGGGGTTGGTGAGGAGGGTAGTGGAGCCCATGCACCAGCGCATTTGCTGGGAGAAGA 25787 Query 59211 ACGACTTGAGCT-CGTAGGGGCAAACTCCCTTGGCAAGGTTCAGGGGAATGTACTTGAGC 59269 | | | |||| | || ||||| || || ||| ||| || || | ||| |||| Sbjct 25786 A-GGCGTGAGGTGTGTCAGGGCAGACACCGCAGGCGAGGCAGAGAGGGACGTATTTGACT 25728 Query 59270 TTCCAGCCGTCGTCAACTACTGCAAAGCCCGTGTGGACGTCCTCGCTGAAGCCAATCTCA 59329 |||||||| || || | || || ||||| || || || ||| || ||||| Sbjct 25727 TTCCAGCCACGGTTCACAGCGTAGAACCCGGTGTGCACATCTTCTGAGAAACCGATCTCC 25668 Query 59330 GCAGTGCCGCCGAAAGGTACAAGCGCCTCTCGGCGGTAGACTGCGCATGTCCCGACGCAC 59389 || || || |||| | || || |||||||||| || || | |||||||| Sbjct 25667 GCTGTACCACCGACTTCCTCGAGGGCTGCTCGGCGGTACACGGCATTGCTACCGACGCAG 25608 Query 59390 ACGGCGCCGCCAAAGGTGTCGCGAGAAACCTGGATGAAACGGTAGAACAGTTCCTGGACG 59449 | || | || || || |||| ||| | || || |||||||| || || || | Sbjct 25607 ATGGAAGCACCCCAGCGGTTGCGATTAACTTCGACGACTCGGTAGAAGAGCTCTTGAATA 25548 Query 59450 GATCCAGCAGCGCGCTCAACCCAAGTCTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTC 59509 |||||| | |||| ||||||||||| || | || ||||||||| || | Sbjct 25547 CCGCCAGCACCCTGCTCGACCCAAGTCTGATCTTTTCTGACTCGGAAGAACTGTGGACTT 25488 Query 59510 TGCACAATCGCGATCTTGCCGTCATGGGAAAAGTAG-GGCATGATTTCCTTGAGGTAGTC 59568 || | || || ||||| | || || | | || | || || | || ||| | || Sbjct 25487 TGGATGATGGCCGTCTTGTCATC-TGCAAGATGTTGTGGGATCAACTCGAGGAGAAAATC 25429 Query 59569 AGGGCGCGGACAGAAGTCAGCATCGAAGATGGCAAAGAA 59607 | ||| |||||||| || || |||||||| | ||||| Sbjct 25428 TGAGCGAGGACAGAAATCTGCGTCGAAGATAGTGAAGAA 25390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921583565136120