Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq332 167 4e-36
seq507 150 3e-31
seq1884 129 1e-24
seq1751 120 6e-22
>seq332
Length=18159
Score = 167 bits (184), Expect = 4e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| || || | |||||||| || || ||||| ||||||||||| || |||||
Sbjct 2016 CCACCGCGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAC 2075
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | ||||| || | ||||| || || || ||||| | || || || || |||
Sbjct 2076 AAGGTACGGCCATCCTCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGGGA 2135
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||| ||||||||||| | ||| ||| |||||||| |||| || || |||
Sbjct 2136 ATGCCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCAACT 2195
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||| || || || ||||||||||||||||| ||||||||
Sbjct 2196 TCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242
Score = 149 bits (164), Expect = 1e-30
Identities = 151/194 (78%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318
|| || |||||||| || ||||||||||| |||||||| || | || || || | |||
Sbjct 2268 TGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGC 2327
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| |||||||| || | | ||| ||||| || |||||||| |||||||| ||||||||
Sbjct 2328 TTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTG 2387
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
| ||| || |||||||| || ||| || || || || | ||||||||| || || ||
Sbjct 2388 GACTTAACATTGTCGATGGTATC-GCTGGACTCAACCTCAAGGGTGATGGTCTTGCCGGT 2446
Query 68438 GAGGGTCTTGACGA 68451
||||||||||||||
Sbjct 2447 GAGGGTCTTGACGA 2460
Score = 140 bits (154), Expect = 6e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || || ||||| ||||||||||| ||||||
Sbjct 1788 CCACCACGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCTC 1847
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | ||||| || | |||||| || || || || |||| || ||||| |||||
Sbjct 1848 AACGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGGG 1907
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| || |||||||||| ||||||| || || ||||| | || || |||
Sbjct 1908 ATTCCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGACTCGACT 1967
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || || || ||||| | ||||| || || || |||||
Sbjct 1968 TCCAATGTAATAGTCTTGCCCGTCAAAGTCTTAACAAAGATTTGCAT 2014
Score = 136 bits (150), Expect = 7e-27
Identities = 154/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | || | ||| || |||||||| || || ||||| || || |||
Sbjct 2527 CCGCCACGAAGACGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAG 2586
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || ||||| || || | ||||||||| || |||
Sbjct 2587 AGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCCGGAGGA 2646
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413
|| || |||||||| |||||||| | |||||| ||||||||||| ||| || || ||
Sbjct 2647 ATACCCTCCTTGTCCTGAATCTTGGACTTGACATTATCGATGGTGTC-GCTGGACTCGAC 2705
Query 68414 TTCCAAGGTGATGGTTTTTCCCGT 68437
||| | ||||||||| || || ||
Sbjct 2706 TTCAAGGGTGATGGTCTTGCCAGT 2729
>seq507
Length=44608
Score = 150 bits (166), Expect = 3e-31
Identities = 168/222 (76%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||||||||| | |||||||| || |||||||| || |||||||| || ||||||
Sbjct 34502 CCACCGCGAAGGCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 34561
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | ||||| |||||||| || || | || ||||| || ||
Sbjct 34562 AGAGTACGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 34621
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413
||||| |||||||| || ||||| | |||||| ||||||||||| ||| || || ||
Sbjct 34622 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTC-GCTGGACTCCAC 34680
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATAT 68455
|| | |||||| || || ||||| | || || ||||||
Sbjct 34681 CTCAAGGGTGATCGTCTTGCCCGTTACTGTAGAGATGAATAT 34722
>seq1884
Length=68653
Score = 129 bits (142), Expect = 1e-24
Identities = 136/179 (76%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || || || || || | ||||| || | ||||| |||||||| ||
Sbjct 46978 TTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATC 47037
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|||| || ||||| || |||||||| ||||| || || ||||| | |||||| |||
Sbjct 47038 AGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCG 47097
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|| ||||| | ||| || || ||||| |||||||| || || || || |||||||||||
Sbjct 47098 ATCGTGTCGGATGACTCGACCTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTGACGAA 47156
>seq1751
Length=39631
Score = 120 bits (132), Expect = 6e-22
Identities = 341/519 (66%), Gaps = 4/519 (1%)
Strand=Plus/Minus
Query 59091 AGTAGAGCATGCCGGACAGGAAGCAGGCCTTTTGGCGGAAGCTCAGATTGGACTTCCAGA 59150
|||| | ||||||||||| | ||||| ||||||| || || || || || |||||
Sbjct 25906 AGTACATCATGCCGGACATGTAGCAGAGCTTTTGGACGAGACTGAGTTTCGAGCGCCAGA 25847
Query 59151 AGTGGGGGTTGGTGCACAGAGTCGTGGAACCCAGCGCCCAACGGTATTGCTGGCTGAAGA 59210
||| |||||||||| || || ||||| |||| ||| || ||||||| |||||
Sbjct 25846 AGTCGGGGTTGGTGAGGAGGGTAGTGGAGCCCATGCACCAGCGCATTTGCTGGGAGAAGA 25787
Query 59211 ACGACTTGAGCT-CGTAGGGGCAAACTCCCTTGGCAAGGTTCAGGGGAATGTACTTGAGC 59269
| | | |||| | || ||||| || || ||| ||| || || | ||| ||||
Sbjct 25786 A-GGCGTGAGGTGTGTCAGGGCAGACACCGCAGGCGAGGCAGAGAGGGACGTATTTGACT 25728
Query 59270 TTCCAGCCGTCGTCAACTACTGCAAAGCCCGTGTGGACGTCCTCGCTGAAGCCAATCTCA 59329
|||||||| || || | || || ||||| || || || ||| || |||||
Sbjct 25727 TTCCAGCCACGGTTCACAGCGTAGAACCCGGTGTGCACATCTTCTGAGAAACCGATCTCC 25668
Query 59330 GCAGTGCCGCCGAAAGGTACAAGCGCCTCTCGGCGGTAGACTGCGCATGTCCCGACGCAC 59389
|| || || |||| | || || |||||||||| || || | ||||||||
Sbjct 25667 GCTGTACCACCGACTTCCTCGAGGGCTGCTCGGCGGTACACGGCATTGCTACCGACGCAG 25608
Query 59390 ACGGCGCCGCCAAAGGTGTCGCGAGAAACCTGGATGAAACGGTAGAACAGTTCCTGGACG 59449
| || | || || || |||| ||| | || || |||||||| || || || |
Sbjct 25607 ATGGAAGCACCCCAGCGGTTGCGATTAACTTCGACGACTCGGTAGAAGAGCTCTTGAATA 25548
Query 59450 GATCCAGCAGCGCGCTCAACCCAAGTCTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTC 59509
|||||| | |||| ||||||||||| || | || ||||||||| || |
Sbjct 25547 CCGCCAGCACCCTGCTCGACCCAAGTCTGATCTTTTCTGACTCGGAAGAACTGTGGACTT 25488
Query 59510 TGCACAATCGCGATCTTGCCGTCATGGGAAAAGTAG-GGCATGATTTCCTTGAGGTAGTC 59568
|| | || || ||||| | || || | | || | || || | || ||| | ||
Sbjct 25487 TGGATGATGGCCGTCTTGTCATC-TGCAAGATGTTGTGGGATCAACTCGAGGAGAAAATC 25429
Query 59569 AGGGCGCGGACAGAAGTCAGCATCGAAGATGGCAAAGAA 59607
| ||| |||||||| || || |||||||| | |||||
Sbjct 25428 TGAGCGAGGACAGAAATCTGCGTCGAAGATAGTGAAGAA 25390
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921583565136120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |