Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq332 118 9e-22 >seq332 Length=18159 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | || || || | ||||| || ||||| |||||||||||||| Sbjct 1787 ACCACCACGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCT 1846 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| ||| || || || |||||||| |||| || ||||| ||||| || || Sbjct 1847 CAACGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGG 1906 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || || || || || ||||||| || | | |||| ||||| | ||| ||||| Sbjct 1907 GATTCCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGACTCGAC 1966 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | || ||||| |||| ||| || ||||| || ||||| Sbjct 1967 TTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTAACAAAGATTTGCAT 2014 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | || || || | ||||| || ||||| |||||||| ||| Sbjct 2013 ATACCACCGCGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCG 2072 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| ||| |||||||| || || || | ||||||||||| || ||||| Sbjct 2073 GACAAGGTACGGCCATCCTCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGG 2132 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || || || |||||| || | | || | ||| || | ||| || Sbjct 2133 GGAATGCCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCA 2192 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || |||||||| || || || || || |||||||| Sbjct 2193 ACTTCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | ||| | || | || || || || ||||||||||| || Sbjct 2524 ATACCGCCACGAAGACGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCA 2583 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| ||| || || || || || |||||| |||| || || |||||||||||| Sbjct 2584 GAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCCGGA 2643 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| |||||| || | | || | ||||||| |||| ||| Sbjct 2644 GGAATACCCTCCTTGTCCTGAATCTTGGACTTGACATTATCGATGGTGTCGCTGGACTCG 2703 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCA 114360 || || | ||| | || ||||| |||| Sbjct 2704 ACTTCAAGGGTGATGGTCTTGCCAGTCA 2731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420117139172052