Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2637 269 5e-67 seq481 154 3e-32 >seq2637 Length=17558 Score = 269 bits (298), Expect = 5e-67 Identities = 926/1424 (65%), Gaps = 55/1424 (4%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | ||||| ||||| ||| | |||| || || Sbjct 7437 GTTGACGACCTGGAACTCGCCAGCAAGCACACGGCGAGAGTAAATGTTGGAAGTGTATGG 7496 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||| | || ||| || ||| || ||||| ||||| ||||| ||||| || | || Sbjct 7497 CTCAAAGCACTCGTTGAAGCCAAGAATCTGACTGGTGCTGGCAGTTGGCATAGGAGCGAC 7556 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGA-GCTCGTTCCAGTCCC 244268 |||| |||||| | | || || || ||| | | | | ||| | |||||||| Sbjct 7557 AAGCAAACTGTTGCGGATACCATGTTGCTTGATCTGTTGCTTCAAGCTA-TCCCAGTCCC 7615 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT-G 244327 | | || ||| | | ||| |||||| | |||| | || ||| ||||| | Sbjct 7616 AGA-----GATCGGT----GGGGGTGATGCCCCATAGGTCATATTGAAGCTCACCCTTCG 7666 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTAC----A 244383 || ||| | |||||| || ||| || ||||| ||| || ||| |||| | | Sbjct 7667 ATGCCGGAGA-GCCCTCATATGTCTCATAAGGACCATCGATCTTGGCAAGCTCAATCGAA 7725 Query 244384 GCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGC 244443 || || | || |||| |||||||||||||||||| ||| |||| | || Sbjct 7726 GCGGTC----AAAGCAGCGTGGTAGATGGTCTCGAAGAT----TTGG--ATGTTGAGGTG 7775 Query 244444 CTTG-CCGCAGGTGAAGGGGATG-----CCCATCATCATGAAGACGTCGGCCAGTCCCTG 244497 |||| || ||||||| | ||| | | || ||| | || || || || || Sbjct 7776 CTTGGCCTCAGGTGAGTCGAATGGAAGACGGAGTGCCAAGAAAGCATCTGCAAGACCTTG 7835 Query 244498 CACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTA 244557 || || | | | ||||||| ||| || |||| || | || ||||| || ||||| Sbjct 7836 AACACCAACGGCAATGGGTCGGTGACGAAAGTTGCTTCGTCTCGCCTCGGGAACTGGGTA 7895 Query 244558 AAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAG 244617 ||||| ||||| | ||||| | ||| | | | || ||| ||| || Sbjct 7896 GTAGTTGATATCGATGATTTTGTTTAAGTTCTTGACAACGACTTGGCAGACCTCGTGGAG 7955 Query 244618 CAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACA-AACTCGTTGA 244676 | ||||||||| || | || || | || ||| || ||| || Sbjct 7956 CTTGGCAAAGTCGTAT--GT----------GCCGTTGTTCATGTCAACATAAGTCGG-GA 8002 Query 244677 GGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCT 244736 | || | | ||||| ||||||||| || | ||| || | | ||||| ||||| | Sbjct 8003 GCGCAAGGGAGGCCAAGTTGCAGACAGCAATCTCGTCTGGCGAAGAGTACTCCACAATTT 8062 Query 244737 CGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGC 244796 | ||||| | |||| || ||| || || |||| || || ||| ||| ||||| Sbjct 8063 CAGTGCACAAGTTAGAGCTTCGGATAGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGC 8122 Query 244797 AGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGT 244856 | || ||||||||||||||||| || ||||||||| || || |||||| | || Sbjct 8123 ATGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAGGATGGAGT 8182 Query 244857 TCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGT 244916 ||| || | |||||||| ||| ||||| |||||||||| |||||| || Sbjct 8183 ACCAAAGCTTTTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCGT 8242 Query 244917 ACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACA 244976 |||| ||||||||||| || |||| || | | ||| |||||| ||||||| Sbjct 8243 ACAGAGCCTCGAACTCATCACCGTAGACATCAGCCAAGCCAGGGCACTCATTGGGGCACA 8302 Query 244977 TGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGG 245036 | ||| |||||||| || | || ||| | || |||||| || ||||| ||||| | || Sbjct 8303 TAAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAATAGATCGGGAATCCACAAGG 8362 Query 245037 CCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAA 245096 | | |||||| || | | | || ||| ||| |||||| | ||| || | Sbjct 8363 CATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGTGGTTCTTTCGCAGGTCAAGGT 8422 Query 245097 AGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGT 245156 | || || || ||| ||||||| ||||| | ||||| ||||| || || || ||||||| Sbjct 8423 ACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCGAAAGCACCTGGGCGCTTGT 8482 Query 245157 TGCCTCCCTGGTCCACCATCCTCTCG-AGCG-CGTTGAAGATGCGCAGGGTAGGCACTAT 245214 |||| ||||||| || ||| ||| | || | |||||||| |||| | || || || Sbjct 8483 TGCCACCCTGGT-CAACAT-ATCTAGCAGTGTTGTTGAAGACTCGCAACATGGGAACAAT 8540 Query 245215 GCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGAT 245274 ||||| |||| |||||||| || ||||||||| || || | | | || ||| Sbjct 8541 TCCGTTGGAGTTTCCGTTGGTACCAGCGATGTAGGCACCAGTGGCACGAATTCTGTGGAT 8600 Query 245275 GGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGC 245334 | | || | || || || | |||||| || | ||| ||| ||||| |||||| Sbjct 8601 GTTTAGACCAATACCTCCCGCATTCTTGGAAATCATGGCACAGGCCTTGAGGGTGTCGTA 8660 Query 245335 TATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTT 245394 ||||| || ||||| || |||||||| || || ||||| || || |||| | || | Sbjct 8661 GATGCCGTCAATGCTATCTTCCTTCATGTCGACAAGGAAGCATGAAGAAAGCT-GAGCCT 8719 Query 245395 GGGGCTGCACGAGTTGAACAGAGTGGGGCTG--GCGTGGGTAAAGTAGCGGCTCGAGAGG 245452 | ||| | || || | | |||||| || || || || || ||||| ||| || | Sbjct 8720 GTGGC-GTACCAGCGGCAAAGAGTGTGGGTGATGCATGAGTGAAGTACTTGCTTGACATC 8778 Query 245453 AACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT 245496 || ||| |||| | ||| ||||| | || |||||||| Sbjct 8779 AAGTTGTATGTCTCAATAGCAGCCTCGATATCCTCACCGTGGAT 8822 >seq481 Length=22500 Score = 154 bits (170), Expect = 3e-32 Identities = 355/518 (69%), Gaps = 15/518 (3%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAAC 42691 || ||||||||||||||||| |||||||| ||| ||||| | || | || | | || Sbjct 2374 CCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATTCA-AGACAAGAAGTCTAC 2316 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 || | | | || || || || | || || ||||| ||||||||||| || | || Sbjct 2315 CTTTGCTCAACGTCTTGTTGCATTCGCAGCTGTTGAGGGTATCTTCTTCTCCGGTTCATT 2256 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 ||| |||||||| ||| | ||| || ||| | |||| |||| || || ||||| || | Sbjct 2255 CGCGTCCATCTTTTGGTTGAAGAAGCGTGGTCT-GATGGCCGGGCTTACTTTCTCCAATG 2197 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 | |||||| | | || ||||| || || | ||||| || ||||| || || || || Sbjct 2196 AGCTCATCTCCCGTGATGAGGGTCTTCACACCGACTTCGCATGCCTTCTTTTTTC---CC 2140 Query 42871 ACCTCAGGCACAAGCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929 || | | |||| |||| | ||| | |||| | ||||||| |||||||| Sbjct 2139 ACTTGAAGCAC-CGCCCAAGCAAGCAAGCCGTCCAAGATGTCATCACTGAGGCCGTCACA 2081 Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGA 42988 || ||| | || ||| | || || | || || ||| | || ||||||||||| | Sbjct 2080 ATTGAGCAAGAATTCTTGACTGAGGCTCTTCCTTGTG-CTCTTCTCGGCATGAACTCAAA 2022 Query 42989 CCTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCC-TGTGCCAGATGGGTCTC 43046 || ||| |||| |||||| ||| ||| || || | ||||| | | | ||| | Sbjct 2021 TCTGATGAAGCAA-TACATCGAGTTCGTTGCTGATCGTCTCCTTCTCGCCCTTGGCAATG 1963 Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106 || ||||||| | ||| |||||||| |||||||||||||| | | || Sbjct 1962 AG-AAAGTCTACAAGGTTACCAACCCATTCGACTTCATGGAGAACATCTCTCTCGCCGGA 1904 Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 ||||||||||| ||||||||||| || | |||||||| Sbjct 1903 AAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCA 1866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944299407906960