Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 269 5e-67
seq481 154 3e-32
>seq2637
Length=17558
Score = 269 bits (298), Expect = 5e-67
Identities = 926/1424 (65%), Gaps = 55/1424 (4%)
Strand=Plus/Plus
Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149
||| || ||||| ||||| || | ||||| ||||| ||| | |||| || ||
Sbjct 7437 GTTGACGACCTGGAACTCGCCAGCAAGCACACGGCGAGAGTAAATGTTGGAAGTGTATGG 7496
Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209
||| | || ||| || ||| || ||||| ||||| ||||| ||||| || | ||
Sbjct 7497 CTCAAAGCACTCGTTGAAGCCAAGAATCTGACTGGTGCTGGCAGTTGGCATAGGAGCGAC 7556
Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGA-GCTCGTTCCAGTCCC 244268
|||| |||||| | | || || || ||| | | | | ||| | ||||||||
Sbjct 7557 AAGCAAACTGTTGCGGATACCATGTTGCTTGATCTGTTGCTTCAAGCTA-TCCCAGTCCC 7615
Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT-G 244327
| | || ||| | | ||| |||||| | |||| | || ||| ||||| |
Sbjct 7616 AGA-----GATCGGT----GGGGGTGATGCCCCATAGGTCATATTGAAGCTCACCCTTCG 7666
Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTAC----A 244383
|| ||| | |||||| || ||| || ||||| ||| || ||| |||| | |
Sbjct 7667 ATGCCGGAGA-GCCCTCATATGTCTCATAAGGACCATCGATCTTGGCAAGCTCAATCGAA 7725
Query 244384 GCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGC 244443
|| || | || |||| |||||||||||||||||| ||| |||| | ||
Sbjct 7726 GCGGTC----AAAGCAGCGTGGTAGATGGTCTCGAAGAT----TTGG--ATGTTGAGGTG 7775
Query 244444 CTTG-CCGCAGGTGAAGGGGATG-----CCCATCATCATGAAGACGTCGGCCAGTCCCTG 244497
|||| || ||||||| | ||| | | || ||| | || || || || ||
Sbjct 7776 CTTGGCCTCAGGTGAGTCGAATGGAAGACGGAGTGCCAAGAAAGCATCTGCAAGACCTTG 7835
Query 244498 CACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTA 244557
|| || | | | ||||||| ||| || |||| || | || ||||| || |||||
Sbjct 7836 AACACCAACGGCAATGGGTCGGTGACGAAAGTTGCTTCGTCTCGCCTCGGGAACTGGGTA 7895
Query 244558 AAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAG 244617
||||| ||||| | ||||| | ||| | | | || ||| ||| ||
Sbjct 7896 GTAGTTGATATCGATGATTTTGTTTAAGTTCTTGACAACGACTTGGCAGACCTCGTGGAG 7955
Query 244618 CAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACA-AACTCGTTGA 244676
| ||||||||| || | || || | || ||| || ||| ||
Sbjct 7956 CTTGGCAAAGTCGTAT--GT----------GCCGTTGTTCATGTCAACATAAGTCGG-GA 8002
Query 244677 GGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCT 244736
| || | | ||||| ||||||||| || | ||| || | | ||||| ||||| |
Sbjct 8003 GCGCAAGGGAGGCCAAGTTGCAGACAGCAATCTCGTCTGGCGAAGAGTACTCCACAATTT 8062
Query 244737 CGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGC 244796
| ||||| | |||| || ||| || || |||| || || ||| ||| |||||
Sbjct 8063 CAGTGCACAAGTTAGAGCTTCGGATAGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGC 8122
Query 244797 AGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGT 244856
| || ||||||||||||||||| || ||||||||| || || |||||| | ||
Sbjct 8123 ATGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAGGATGGAGT 8182
Query 244857 TCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGT 244916
||| || | |||||||| ||| ||||| |||||||||| |||||| ||
Sbjct 8183 ACCAAAGCTTTTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCGT 8242
Query 244917 ACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACA 244976
|||| ||||||||||| || |||| || | | ||| |||||| |||||||
Sbjct 8243 ACAGAGCCTCGAACTCATCACCGTAGACATCAGCCAAGCCAGGGCACTCATTGGGGCACA 8302
Query 244977 TGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGG 245036
| ||| |||||||| || | || ||| | || |||||| || ||||| ||||| | ||
Sbjct 8303 TAAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAATAGATCGGGAATCCACAAGG 8362
Query 245037 CCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAA 245096
| | |||||| || | | | || ||| ||| |||||| | ||| || |
Sbjct 8363 CATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGTGGTTCTTTCGCAGGTCAAGGT 8422
Query 245097 AGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGT 245156
| || || || ||| ||||||| ||||| | ||||| ||||| || || || |||||||
Sbjct 8423 ACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCGAAAGCACCTGGGCGCTTGT 8482
Query 245157 TGCCTCCCTGGTCCACCATCCTCTCG-AGCG-CGTTGAAGATGCGCAGGGTAGGCACTAT 245214
|||| ||||||| || ||| ||| | || | |||||||| |||| | || || ||
Sbjct 8483 TGCCACCCTGGT-CAACAT-ATCTAGCAGTGTTGTTGAAGACTCGCAACATGGGAACAAT 8540
Query 245215 GCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGAT 245274
||||| |||| |||||||| || ||||||||| || || | | | || |||
Sbjct 8541 TCCGTTGGAGTTTCCGTTGGTACCAGCGATGTAGGCACCAGTGGCACGAATTCTGTGGAT 8600
Query 245275 GGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGC 245334
| | || | || || || | |||||| || | ||| ||| ||||| ||||||
Sbjct 8601 GTTTAGACCAATACCTCCCGCATTCTTGGAAATCATGGCACAGGCCTTGAGGGTGTCGTA 8660
Query 245335 TATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTT 245394
||||| || ||||| || |||||||| || || ||||| || || |||| | || |
Sbjct 8661 GATGCCGTCAATGCTATCTTCCTTCATGTCGACAAGGAAGCATGAAGAAAGCT-GAGCCT 8719
Query 245395 GGGGCTGCACGAGTTGAACAGAGTGGGGCTG--GCGTGGGTAAAGTAGCGGCTCGAGAGG 245452
| ||| | || || | | |||||| || || || || || ||||| ||| || |
Sbjct 8720 GTGGC-GTACCAGCGGCAAAGAGTGTGGGTGATGCATGAGTGAAGTACTTGCTTGACATC 8778
Query 245453 AACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT 245496
|| ||| |||| | ||| ||||| | || ||||||||
Sbjct 8779 AAGTTGTATGTCTCAATAGCAGCCTCGATATCCTCACCGTGGAT 8822
>seq481
Length=22500
Score = 154 bits (170), Expect = 3e-32
Identities = 355/518 (69%), Gaps = 15/518 (3%)
Strand=Plus/Minus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAAC 42691
|| ||||||||||||||||| |||||||| ||| ||||| | || | || | | ||
Sbjct 2374 CCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATTCA-AGACAAGAAGTCTAC 2316
Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751
|| | | | || || || || | || || ||||| ||||||||||| || | ||
Sbjct 2315 CTTTGCTCAACGTCTTGTTGCATTCGCAGCTGTTGAGGGTATCTTCTTCTCCGGTTCATT 2256
Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810
||| |||||||| ||| | ||| || ||| | |||| |||| || || ||||| || |
Sbjct 2255 CGCGTCCATCTTTTGGTTGAAGAAGCGTGGTCT-GATGGCCGGGCTTACTTTCTCCAATG 2197
Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870
| |||||| | | || ||||| || || | ||||| || ||||| || || || ||
Sbjct 2196 AGCTCATCTCCCGTGATGAGGGTCTTCACACCGACTTCGCATGCCTTCTTTTTTC---CC 2140
Query 42871 ACCTCAGGCACAAGCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929
|| | | |||| |||| | ||| | |||| | ||||||| ||||||||
Sbjct 2139 ACTTGAAGCAC-CGCCCAAGCAAGCAAGCCGTCCAAGATGTCATCACTGAGGCCGTCACA 2081
Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGA 42988
|| ||| | || ||| | || || | || || ||| | || ||||||||||| |
Sbjct 2080 ATTGAGCAAGAATTCTTGACTGAGGCTCTTCCTTGTG-CTCTTCTCGGCATGAACTCAAA 2022
Query 42989 CCTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCC-TGTGCCAGATGGGTCTC 43046
|| ||| |||| |||||| ||| ||| || || | ||||| | | | ||| |
Sbjct 2021 TCTGATGAAGCAA-TACATCGAGTTCGTTGCTGATCGTCTCCTTCTCGCCCTTGGCAATG 1963
Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106
|| ||||||| | ||| |||||||| |||||||||||||| | | ||
Sbjct 1962 AG-AAAGTCTACAAGGTTACCAACCCATTCGACTTCATGGAGAACATCTCTCTCGCCGGA 1904
Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144
||||||||||| ||||||||||| || | ||||||||
Sbjct 1903 AAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCA 1866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944299407906960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |