Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq481 122 2e-22
seq332 118 3e-21
seq507 93.3 1e-13
seq1884 91.5 3e-13
>seq481
Length=22500
Score = 122 bits (134), Expect = 2e-22
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGT 269157
|| || || |||| || |||| ||| | ||| ||| | || ||| || | ||||
Sbjct 2092 GAGGCCGTCACAATTGAGCAAGAATTCTTGACTGAGGCTCTTCCTTGTGCTCTTCTCGGC 2033
Query 269158 ATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATC-TTCACGGC 269216
||||| | |||| ||||| ||||| ||||| ||||| ||||||||| || ||| || |
Sbjct 2032 ATGAACTCAAATCTGATGAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTTCTCGCC 1973
Query 269217 ACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTC 269276
|| || |||||||||| ||||| | || || |||| ||| ||||| || ||
Sbjct 1972 -CTTGGCAATGAGAAAGTCTACAAGGTTACCAACCCATTCGACTTCATGGAGAACATCTC 1914
Query 269277 GCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAA 269325
|||| |||||||| ||||||||||| |||||||| | ||||| |||
Sbjct 1913 TCTCGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCAA 1865
>seq332
Length=18159
Score = 118 bits (130), Expect = 3e-21
Identities = 165/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||||||||| | ||| || | || | || || |||||||| || |||||||
Sbjct 2016 CCACCGCGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAC 2075
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || || || || || | ||| ||||| || || || |||||||| || ||| |||
Sbjct 2076 AAGGTACGGCCATCCTCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTG---ATCCGGG 2132
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || ||||| || || |||| || ||||| || || | ||| || ||
Sbjct 2133 GGAATGCCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCA 2192
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| || ||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 2193 ACTTCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242
>seq507
Length=44608
Score = 93.3 bits (102), Expect = 1e-13
Identities = 153/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| || | || || | || | ||| || || ||||| || ||||||| |
Sbjct 34502 CCACCGCGAAGGCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 34561
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | ||| || || ||||||||||| ||||| || |||
Sbjct 34562 AGAGTACGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 34621
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || | || || || || || | ||||| || || ||
Sbjct 34622 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCCACC 34681
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATAT 288467
|| || ||||||||||| || || | || || ||||||
Sbjct 34682 TCAAGGGTGATCGTCTTGCCCGTTACTGTAGAGATGAATAT 34722
>seq1884
Length=68653
Score = 91.5 bits (100), Expect = 3e-13
Identities = 130/182 (71%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| ||||| || ||||| | || ||||| || || || | ||| ||||| ||||| |||
Sbjct 46978 TTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATC 47037
Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| ||||| || || ||| || || || ||||||||||| || | || || ||
Sbjct 47038 AGTCGCTGCTGG---TCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTG 47094
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||| || || || || | ||||| ||||| || || ||||||||||||
Sbjct 47095 TCGATCGTGTCGGATGACTCGACCTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTGACG 47154
Query 288463 AA 288464
||
Sbjct 47155 AA 47156
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179603449620538
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |