Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq481 102 2e-16
seq2637 91.5 3e-13
>seq481
Length=22500
Score = 102 bits (112), Expect = 2e-16
Identities = 281/427 (66%), Gaps = 14/427 (3%)
Strand=Plus/Minus
Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCG-CCATCTTTTGGCTGCGGAACAAAGG 243377
||||| ||||| | || ||||| ||| ||| ||||||||||| || ||| ||
Sbjct 2284 GTTGAGGGTATCTTCTTCTCCGGTTCATTC-GCGTCCATCTTTTGGTTGAAGAAGCGTGG 2226
Query 243378 TGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCA 243437
| ||||| | || || | | || || ||| ||||| || || ||||| ||||||
Sbjct 2225 TCTGATGGCCGGGCTTACTTTCTCCAATGAGCTCATCTCCCGTGATGAGGGTCTTCACAC 2166
Query 243438 ACAGTTCGGTGAGCTTATGTATTCA------AAGCTCCAGAACAAGCTACCATTCGAAAC 243491
| |||| ||| | | ||| |||| || | ||||| | || | |
Sbjct 2165 CGACTTCGCATGCCTTCTTTTTTCCCACTTGAAGCACC-GCCCAAGCAAGCA-----AGC 2112
Query 243492 GGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTAT 243551
||| || | ||||||| || || || || || | |||||| | || ||| |
Sbjct 2111 CGTCCAAGATGTCATCACTGAGGCCGTCACAATTGAGCAAGAATTCTTGACTGAGGCTCT 2052
Query 243552 TCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGC 243611
||| || ||| | ||||||||||| | || ||| || |||||||| ||||| ||
Sbjct 2051 TCCTTGTGCTCTTCTCGGCATGAACTCAAATCTGATGAAGCAATACATCGAGTTCGTTGC 1992
Query 243612 CGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGC 243671
|| || | | |||| ||||| |||||||||| ||||| | ||||| || |
Sbjct 1991 TGATCGTCTCCTTCTCGCCCTTGGCAATGAGAAAGTCTACAAGGTTACCAACCCATTCGA 1932
Query 243672 CTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGA 243731
||| |||||| ||| || || || || || ||||||||||| |||||||| ||||
Sbjct 1931 CTTCATGGAGAACATCTCTCTCGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTTGGTGA 1872
Query 243732 TTATCAA 243738
|| |||
Sbjct 1871 CTACCAA 1865
>seq2637
Length=17558
Score = 91.5 bits (100), Expect = 3e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 318797 CGCCCCATCGGTGTTGGAGTTCAAGGACTTCAGGATGTATTCTTCAAACTGAAGCTCCCA 318856
|| ||||| | ||||| |||||||| ||| |||| ||||| ||| || |||
Sbjct 7856 CGACCCATTGCCGTTGGTGTTCAAGGTCTTGCAGATGCTTTCTTGGCACTCCGTCTTCCA 7797
Query 318857 TTCGACTCATCGGAAGCCAGGGATCTCAACCGCGAAATCTTCGAACATATCTACTACGCC 318916
||||||||| | || |||| | | |||||| | |||||||||| |||||| ||||
Sbjct 7796 TTCGACTCACCTGAGGCCAAGCACCTCAACATCCAAATCTTCGAGACCATCTACCACGCT 7737
Query 318917 GCTGTAGAAGCATCGATAGAACTCGCTGAGATCCACGGTCCTTATCCAACATTCGAAGGG 318976
||| | || ||||| || || || ||||| | ||||||||| |||| || ||
Sbjct 7736 GCTTTGACCGCTTCGATTGAGCTTGCCAAGATCGATGGTCCTTATGAGACATATGAGGGC 7677
Query 318977 TCTCCCGC 318984
||||| ||
Sbjct 7676 TCTCCGGC 7669
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102832365578850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |