Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq481 102 2e-16 seq2637 91.5 3e-13 >seq481 Length=22500 Score = 102 bits (112), Expect = 2e-16 Identities = 281/427 (66%), Gaps = 14/427 (3%) Strand=Plus/Minus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCG-CCATCTTTTGGCTGCGGAACAAAGG 243377 ||||| ||||| | || ||||| ||| ||| ||||||||||| || ||| || Sbjct 2284 GTTGAGGGTATCTTCTTCTCCGGTTCATTC-GCGTCCATCTTTTGGTTGAAGAAGCGTGG 2226 Query 243378 TGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCA 243437 | ||||| | || || | | || || ||| ||||| || || ||||| |||||| Sbjct 2225 TCTGATGGCCGGGCTTACTTTCTCCAATGAGCTCATCTCCCGTGATGAGGGTCTTCACAC 2166 Query 243438 ACAGTTCGGTGAGCTTATGTATTCA------AAGCTCCAGAACAAGCTACCATTCGAAAC 243491 | |||| ||| | | ||| |||| || | ||||| | || | | Sbjct 2165 CGACTTCGCATGCCTTCTTTTTTCCCACTTGAAGCACC-GCCCAAGCAAGCA-----AGC 2112 Query 243492 GGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTAT 243551 ||| || | ||||||| || || || || || | |||||| | || ||| | Sbjct 2111 CGTCCAAGATGTCATCACTGAGGCCGTCACAATTGAGCAAGAATTCTTGACTGAGGCTCT 2052 Query 243552 TCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGC 243611 ||| || ||| | ||||||||||| | || ||| || |||||||| ||||| || Sbjct 2051 TCCTTGTGCTCTTCTCGGCATGAACTCAAATCTGATGAAGCAATACATCGAGTTCGTTGC 1992 Query 243612 CGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGC 243671 || || | | |||| ||||| |||||||||| ||||| | ||||| || | Sbjct 1991 TGATCGTCTCCTTCTCGCCCTTGGCAATGAGAAAGTCTACAAGGTTACCAACCCATTCGA 1932 Query 243672 CTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGA 243731 ||| |||||| ||| || || || || || ||||||||||| |||||||| |||| Sbjct 1931 CTTCATGGAGAACATCTCTCTCGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTTGGTGA 1872 Query 243732 TTATCAA 243738 || ||| Sbjct 1871 CTACCAA 1865 >seq2637 Length=17558 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 318797 CGCCCCATCGGTGTTGGAGTTCAAGGACTTCAGGATGTATTCTTCAAACTGAAGCTCCCA 318856 || ||||| | ||||| |||||||| ||| |||| ||||| ||| || ||| Sbjct 7856 CGACCCATTGCCGTTGGTGTTCAAGGTCTTGCAGATGCTTTCTTGGCACTCCGTCTTCCA 7797 Query 318857 TTCGACTCATCGGAAGCCAGGGATCTCAACCGCGAAATCTTCGAACATATCTACTACGCC 318916 ||||||||| | || |||| | | |||||| | |||||||||| |||||| |||| Sbjct 7796 TTCGACTCACCTGAGGCCAAGCACCTCAACATCCAAATCTTCGAGACCATCTACCACGCT 7737 Query 318917 GCTGTAGAAGCATCGATAGAACTCGCTGAGATCCACGGTCCTTATCCAACATTCGAAGGG 318976 ||| | || ||||| || || || ||||| | ||||||||| |||| || || Sbjct 7736 GCTTTGACCGCTTCGATTGAGCTTGCCAAGATCGATGGTCCTTATGAGACATATGAGGGC 7677 Query 318977 TCTCCCGC 318984 ||||| || Sbjct 7676 TCTCCGGC 7669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102832365578850