Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq481 129 7e-25 >seq481 Length=22500 Score = 129 bits (142), Expect = 7e-25 Identities = 159/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| |||||||| |||||||||||||| ||||| ||||| || || | ||| ||||| Sbjct 2168 GTGAAGACCCTCATCACGGGAGATGAGCTCATTGGAGAAAGTAAGCCCGGCCATCAGACC 2227 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||||||||| || || | |||||||| ||||||||||| ||||| ||| Sbjct 2228 ACGCTTCTTCAACCAAAAGATGGACGCGAATGAACCGGAGAAGAAGATACCCTCAACAGC 2287 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTC---AAACCACTTCAT 126234 ||||| |||| ||||| | |||||||| ||||| |||| || ||| | | Sbjct 2288 TGCGAATGCAACAAGACGTTGAGCAAAGG---TAGACTTCTTGTCTTGAATCCATCTGAC 2344 Query 126235 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGT 126270 ||||| | ||||| |||| ||| || || || || Sbjct 2345 AGCCCAGTCGGCCTTCTTCTTGATGCAAGGAACTGT 2380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597328429012680