Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq332 114 1e-20
seq507 95.1 1e-14
seq1884 91.5 2e-13
>seq332
Length=18159
Score = 114 bits (126), Expect = 1e-20
Identities = 170/236 (72%), Gaps = 4/236 (2%)
Strand=Plus/Plus
Query 41975 TTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 42034
|||| |||| || | | ||| | ||||| || | || ||||||||| || |||||
Sbjct 1781 TTATTGACCACCACGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTA 1840
Query 42035 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094
||| || || || | || || |||||||||||||| || || ||||||||||||||
Sbjct 1841 ATCGCTCAACGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTC 1900
Query 42095 GGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTC 42152
| ||| | | |||||| ||| ||| | |||| |||| ||| | | | ||||||
Sbjct 1901 AGGTGGGATTCCCTCCTTATCC-TGAATCTTTGACTTGA-CGTTGTCAATCGTGTCCGAG 1958
Query 42153 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || || || | || || || |||||||| | ||||| ||||||||||||||
Sbjct 1959 GACTCGACTTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTAACAAAGATTTGCAT 2014
>seq507
Length=44608
Score = 95.1 bits (104), Expect = 1e-14
Identities = 133/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
||||| || | ||| |||||| || || ||||| || | ||||| || | || ||
Sbjct 34520 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCATCCTCG 34579
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
|| ||||| || ||||| || || ||||||||||| | || | || |||||||||| |
Sbjct 34580 AGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 34639
Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179
|| || |||| | | | |||||||| || ||||| || | ||||| || |||
Sbjct 34640 ATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCCACCTCAAGGGTGATCGTCTTG 34699
Query 42180 CCCGTTA 42186
|||||||
Sbjct 34700 CCCGTTA 34706
>seq1884
Length=68653
Score = 91.5 bits (100), Expect = 2e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| || || ||||| |||| ||||| || | || || || ||||| || ||||| |
Sbjct 46976 CCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAA 47035
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| |||||||||||||| | || | || |||||| ||| ||| || |||| |
Sbjct 47036 TCAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGT 47095
Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198
| | ||||||| || || || || | |||||||| ||||| || || ||||| || |
Sbjct 47096 CGATCGTGTCGGATGACTCGACCTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTGACGA 47155
Query 42199 AGATTTGCAT 42208
|| | | |||
Sbjct 47156 AGCTATTCAT 47165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543189910370640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |