Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2637 226 3e-54 >seq2637 Length=17558 Score = 226 bits (250), Expect = 3e-54 Identities = 447/659 (68%), Gaps = 2/659 (0%) Strand=Plus/Minus Query 93978 CGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGG 94037 ||| || | ||||| |||||||| |||||| | || || || | ||||| || || || Sbjct 8667 CGGCATCTACGACACCCTCAAGGCCTGTGCCATGATTTCCAAGAATGCGGGAGGTATTGG 8608 Query 94038 GATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTC 94097 | | ||||| | ||||||| ||| |||||||| |||||||| || | ||| Sbjct 8607 TCTAAACATCCACAGAATTCGTGCCACTGGTGCCTACATCGCTGGTACCAACGGAAACTC 8548 Query 94098 CAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGG 94157 |||||| | || || ||| | || |||||||||||| | || | || || |||||||| Sbjct 8547 CAACGGAATTGTTCCCATGTTGCGAGTCTTCAACAACACTGCTAGATATGTTGACCAGGG 8488 Query 94158 TGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCA 94217 ||| | | | ||| ||||||| |||| |||||||| |||||||| || || Sbjct 8487 TGGCAACAAGCGCCCAGGTGCTTTCGCTATCTACCTCGAGCCATGGCACGCCGATGTTTT 8428 Query 94218 GGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTT 94277 | | | | ||||||||||||||||||||||| || | | || | || ||||| Sbjct 8427 CGAGTACCTTGACCTGCGAAAGAACCACGGCAAGGAGGAAGTTCGTGCTCGCGATCTCTT 8368 Query 94278 CTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAG 94337 ||| || | ||| | || || || || ||||| || |||||||| ||| ||| |||| Sbjct 8367 CTATGCCTTGTGGATTCCCGATCTATTCATGAAGCGTGTCGAGAAGAACGCCGAGTGGAC 8308 Query 94338 TCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGA 94397 |||| | || |||||||| || || || || | || || | || | | || || Sbjct 8307 TCTTATGTGCCCCAATGAGTGCCCTGGCTTGGCTGATGTCTACGG-TGATGAGTTCGAGG 8249 Query 94398 CT-TGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGC 94456 || |||| | ||||| | ||||||||| | ||| ||| | ||| |||| Sbjct 8248 CTCTGTACGAGAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACTATCAAGGCTCAAAAGC 8189 Query 94457 TGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGG 94516 | ||| | ||| | || | || ||||| || | || | ||| | | ||||| Sbjct 8188 TTTGGTACTCCATCCTCGAGGCTCAAACCGAGACCGGAAACCCATTCATGCTCTACAAGG 8129 Query 94517 ACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGT 94576 | | |||| ||| ||||||| || |||| || ||| ||||| || ||| Sbjct 8128 ATGCATGCAACCGAAAGAGCAACCAGAAGAACCTTGGTACTATCCGAAGCTCTAACTTGT 8069 Query 94577 GCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCC 94635 |||| || ||||| ||||| |||| || |||||||||||||| || ||| ||| |||| Sbjct 8068 GCACTGAAATTGTGGAGTACTCTTCGCCAGACGAGATTGCTGTCTGCAACTTGGCCTCC 8010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494702353601160