Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 226 3e-54
>seq2637
Length=17558
Score = 226 bits (250), Expect = 3e-54
Identities = 447/659 (68%), Gaps = 2/659 (0%)
Strand=Plus/Minus
Query 93978 CGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGG 94037
||| || | ||||| |||||||| |||||| | || || || | ||||| || || ||
Sbjct 8667 CGGCATCTACGACACCCTCAAGGCCTGTGCCATGATTTCCAAGAATGCGGGAGGTATTGG 8608
Query 94038 GATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTC 94097
| | ||||| | ||||||| ||| |||||||| |||||||| || | |||
Sbjct 8607 TCTAAACATCCACAGAATTCGTGCCACTGGTGCCTACATCGCTGGTACCAACGGAAACTC 8548
Query 94098 CAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGG 94157
|||||| | || || ||| | || |||||||||||| | || | || || ||||||||
Sbjct 8547 CAACGGAATTGTTCCCATGTTGCGAGTCTTCAACAACACTGCTAGATATGTTGACCAGGG 8488
Query 94158 TGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCA 94217
||| | | | ||| ||||||| |||| |||||||| |||||||| || ||
Sbjct 8487 TGGCAACAAGCGCCCAGGTGCTTTCGCTATCTACCTCGAGCCATGGCACGCCGATGTTTT 8428
Query 94218 GGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTT 94277
| | | | ||||||||||||||||||||||| || | | || | || |||||
Sbjct 8427 CGAGTACCTTGACCTGCGAAAGAACCACGGCAAGGAGGAAGTTCGTGCTCGCGATCTCTT 8368
Query 94278 CTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAG 94337
||| || | ||| | || || || || ||||| || |||||||| ||| ||| ||||
Sbjct 8367 CTATGCCTTGTGGATTCCCGATCTATTCATGAAGCGTGTCGAGAAGAACGCCGAGTGGAC 8308
Query 94338 TCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGA 94397
|||| | || |||||||| || || || || | || || | || | | || ||
Sbjct 8307 TCTTATGTGCCCCAATGAGTGCCCTGGCTTGGCTGATGTCTACGG-TGATGAGTTCGAGG 8249
Query 94398 CT-TGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGC 94456
|| |||| | ||||| | ||||||||| | ||| ||| | ||| ||||
Sbjct 8248 CTCTGTACGAGAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACTATCAAGGCTCAAAAGC 8189
Query 94457 TGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGG 94516
| ||| | ||| | || | || ||||| || | || | ||| | | |||||
Sbjct 8188 TTTGGTACTCCATCCTCGAGGCTCAAACCGAGACCGGAAACCCATTCATGCTCTACAAGG 8129
Query 94517 ACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGT 94576
| | |||| ||| ||||||| || |||| || ||| ||||| || |||
Sbjct 8128 ATGCATGCAACCGAAAGAGCAACCAGAAGAACCTTGGTACTATCCGAAGCTCTAACTTGT 8069
Query 94577 GCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCC 94635
|||| || ||||| ||||| |||| || |||||||||||||| || ||| ||| ||||
Sbjct 8068 GCACTGAAATTGTGGAGTACTCTTCGCCAGACGAGATTGCTGTCTGCAACTTGGCCTCC 8010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494702353601160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |