Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq507 96.9 3e-15 seq332 91.5 1e-13 >seq507 Length=44608 Score = 96.9 bits (106), Expect = 3e-15 Identities = 135/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| || || | | | |||||||| || |||||||||||| | |||||| ||||| Sbjct 34519 AACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCATCCTC 34578 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 |||||| || |||| |||| || ||||| |||||||| || || || || ||||| Sbjct 34579 GAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 34638 Query 138525 GATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 ||| || || | |||| || | ||||||| | ||||||||||| | || | ||| | Sbjct 34639 GATCTTGGACTTGACATTG-TCGATGGTGTCGCTGGACTCCACCTCAAGGGTGATCGTCT 34697 Query 138584 TACCAGT 138590 | || || Sbjct 34698 TGCCCGT 34704 >seq332 Length=18159 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||| ||||||| ||||| ||||| || || ||||| | | Sbjct 1821 GACTCCTTTTGGATGTTGTAATCGCTCAACGTACGGCCATCCTCCAGCTGCTTACCAGCA 1880 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||| ||||| || || || || || || || ||| | |||| || | Sbjct 1881 AAGATCAGTCGCTGCTGGTCAGGTGGGATTCCCTCCTTATC-CTGAATCTTTGACTTGAC 1939 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | ||||| || || | || | || || || |||| ||| | Sbjct 1940 GTTG-TCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGTCTTGCCCGTCAAAGTCT 1998 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| || ||||| Sbjct 1999 TAACAAAGATTTGCAT 2014 Score = 86.0 bits (94), Expect = 6e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | ||| | || | | |||||||| |||||||||||||| Sbjct 2527 CCGCCACGAAGACGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAG 2586 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||| || || || | |||| || || |||||||||||||| Sbjct 2587 AGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCCGGAGGA 2646 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| | || | || | | || | ||||||| | ||||| || Sbjct 2647 ATACCCTCCTTGTC-CTGAATCTTGGACTTGACATTATCGATGGTGTCGCTGGACTCGAC 2705 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCA 138592 || | || | || || ||||||| Sbjct 2706 TTCAAGGGTGATGGTCTTGCCAGTCA 2731 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||||||| || ||||| ||||| ||||| || || | | Sbjct 2049 GACTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCAAGTTGCTTTCCCGCA 2108 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || |||||||| || ||||| || || || || || || ||| | || | |||| Sbjct 2109 AAAATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATC-TTGAATCTTCGACTTAAC 2167 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||| || | ||||| || || | || | || || || || || || | Sbjct 2168 GTTG-TCGATGGTATCTGAGGACTCAACTTCAAGAGTGATAGTCTTGCCGGTGAGGGTCT 2226 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 2227 TGACGAAGATCTGCAT 2242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496241488743120