Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq332 98.7 9e-16
seq507 87.8 2e-12
>seq332
Length=18159
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||||| || | |||||||| ||||| || ||||| ||| |
Sbjct 2016 CCACCGCGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAC 2075
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || || || ||||| || | || | ||||||||||| || ||
Sbjct 2076 AAGGTACGGCCATCCTCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGGGA 2135
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||| || || ||| ||| | |||| |||| ||| || | ||| ||
Sbjct 2136 ATGCCCTCCTTATCTTGAATCTTCGACTTAACGTTG-TCGATGGTATCTGAGGACTCAAC 2194
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | || | || |||||||| || || || || || ||||||||
Sbjct 2195 TTCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242
Score = 86.0 bits (94), Expect = 6e-12
Identities = 124/175 (71%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| ||||| || | |||||| || || ||||| || |||
Sbjct 2557 GTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCA 2616
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||||| || || || || ||||| || |||||||||||| || || ||||
Sbjct 2617 GCGAAGATCAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTG 2676
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091
| | |||| |||||| | ||||||||| | ||| | || ||||| ||||
Sbjct 2677 ACATTATCGATGGTGTCGCTGGACTCGACTTCAAGGGTGATGGTCTTGCCAGTCA 2731
>seq507
Length=44608
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||||| || | || ||||| || || || ||||| |||
Sbjct 34502 CCACCGCGAAGGCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 34561
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || || || || || ||| |||||| |||||||| || || ||
Sbjct 34562 AGAGTACGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 34621
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||||| | |||| |||||| | ||| ||
Sbjct 34622 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCCACC 34681
Query 127067 TCGACGGTCACCGTTTTGCCGGT 127089
|| | ||| | ||| ||||| ||
Sbjct 34682 TCAAGGGTGATCGTCTTGCCCGT 34704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475480763585040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |