Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq332 104 2e-17 seq1884 86.0 6e-12 >seq332 Length=18159 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||||||||| || |||||||| | || ||| |||| || Sbjct 1812 TGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCTCAACGTACGGCCATCCTCCAGCTGC 1871 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | |||| ||| |||||||| || || || || || ||||| ||||| ||| Sbjct 1872 TTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGGGATTCCCTCCTTATCCTGAATCTTT 1931 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | ||||| || ||||||||||| | |||| || ||||| || Sbjct 1932 GACTTGA-CGTTGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGTCTTGCCCGT 1990 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | ||| || ||||| |||||||| Sbjct 1991 CAAAGTCTTAACAAAGATTTGCAT 2014 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | || | || || || || ||||||||||| || || ||| Sbjct 2013 ATACCACCGCGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCG 2072 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||| ||||| || | || | || ||||| ||||| Sbjct 2073 GACAAGGTACGGCCATCCTCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGG 2132 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || |||||||||| | || | | | || | || | ||| || || ||||| Sbjct 2133 GGAATGCCCTCCTTATCTTGAA-TCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTC 2191 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| | || |||||||| || || || || || || ||||| Sbjct 2192 AACTTCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242 >seq1884 Length=68653 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| || | ||| ||||| ||| | |||| ||| ||||||||||| |||||||| || || Sbjct 47010 ATCCTCGAGTTGCTTTCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTT 47069 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||| || || || |||| || | |||||||| |||||||| || | ||| | Sbjct 47070 ATCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGATGACTCGACCTCCAAAGTGAT 47129 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAA 45331 || ||||| || ||||| || || || Sbjct 47130 GGTCTTGCCAGTAAGAGTCTTGACGAA 47156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451984153715160