Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq332 104 2e-17
seq1884 86.0 6e-12
>seq332
Length=18159
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || || ||||||||||| || |||||||| | || ||| |||| ||
Sbjct 1812 TGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCTCAACGTACGGCCATCCTCCAGCTGC 1871
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || || | |||| ||| |||||||| || || || || || ||||| ||||| |||
Sbjct 1872 TTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGGGATTCCCTCCTTATCCTGAATCTTT 1931
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
|||| || | || | ||||| || ||||||||||| | |||| || ||||| ||
Sbjct 1932 GACTTGA-CGTTGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGTCTTGCCCGT 1990
Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340
| ||| || ||||| ||||||||
Sbjct 1991 CAAAGTCTTAACAAAGATTTGCAT 2014
Score = 95.1 bits (104), Expect = 1e-14
Identities = 161/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || |||||||| | | || | || || || || ||||||||||| || || |||
Sbjct 2013 ATACCACCGCGGAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCG 2072
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| ||| || | ||| ||||| || | || | || ||||| |||||
Sbjct 2073 GACAAGGTACGGCCATCCTCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGG 2132
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|||||||| || |||||||||| | || | | | || | || | ||| || || |||||
Sbjct 2133 GGAATGCCCTCCTTATCTTGAA-TCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTC 2191
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| ||||| | || |||||||| || || || || || || |||||
Sbjct 2192 AACTTCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2242
>seq1884
Length=68653
Score = 86.0 bits (94), Expect = 6e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244
||| || | ||| ||||| ||| | |||| ||| ||||||||||| |||||||| || ||
Sbjct 47010 ATCCTCGAGTTGCTTTCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTT 47069
Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304
||| || || || |||| || | |||||||| |||||||| || | ||| |
Sbjct 47070 ATCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGATGACTCGACCTCCAAAGTGAT 47129
Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAA 45331
|| ||||| || ||||| || || ||
Sbjct 47130 GGTCTTGCCAGTAAGAGTCTTGACGAA 47156
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451984153715160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |