Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2637 109 9e-19 >seq2637 Length=17558 Score = 109 bits (120), Expect = 9e-19 Identities = 341/520 (66%), Gaps = 20/520 (4%) Strand=Plus/Plus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTC--ACCACCCCCACATGCTGCTGGTTA 204940 |||||| || || |||||||||||| || ||| | || | | || |||||| Sbjct 8052 CTCCACAATTTCAGTGCACAAGTTAGAGC--TTCGGATAGTACCAAGGTTCTTCTGGTTG 8109 Query 204941 GACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA- 204999 ||| ||||| || | |||||||| | |||||| || ||||| |||| | |||| Sbjct 8110 CTCTTTCGGTTGCATGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCC 8169 Query 205000 TCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCA----CTTGCTTCACGTACATCCCTT 205055 ||| || ||| | ||| | | |||||| | ||||| | | | | |||| Sbjct 8170 TCG-AGGATGGAGTACCAAAGCTTTTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTT 8228 Query 205056 GAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTG 205115 |||||| || |||||| ||| | || ||| |||||| || || || || | Sbjct 8229 ----CTCGTACTTCTCGTACAGAGCCTCGAACTCATCACCGTAGACATCAGCCAAGCCAG 8284 Query 205116 GACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTC---ACCCTCTCCATAA 205172 | || | ||||| ||||| |||| |||| || | ||| ||| || | || ||| | Sbjct 8285 GGCACTCATTGGGGCACATAAGAGTCCAC-TCGG--CGTTCTTCTCGACACGCTTCATGA 8341 Query 205173 ACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAA 205232 | || ||| ||||||| | | || || ||||| || || | || | | || | || Sbjct 8342 ATAGATCGGGAATCCACAAGGCATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGT 8401 Query 205233 GGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGG 205292 |||||||| || ||| || | | || ||||||||||| ||||| | | | | Sbjct 8402 GGTTCTTTCGCAGGTCAAGGTACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAG 8461 Query 205293 CCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAA 205352 | | || ||||| | |||||| ||||||||||| || | || | |||||| | Sbjct 8462 CGAAAGCACCTGGGCGCTTGTTGCCACCCTGGTCAACATATCTAGCAGTGTTGTTGAAGA 8521 Query 205353 CTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392 |||||| ||| || || | ||||||| | | ||||| || Sbjct 8522 CTCGCAACATGGGAACAATTCCGTTGGAGTTTCCGTTGGT 8561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795121694147760