Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 109 9e-19
>seq2637
Length=17558
Score = 109 bits (120), Expect = 9e-19
Identities = 341/520 (66%), Gaps = 20/520 (4%)
Strand=Plus/Plus
Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTC--ACCACCCCCACATGCTGCTGGTTA 204940
|||||| || || |||||||||||| || ||| | || | | || ||||||
Sbjct 8052 CTCCACAATTTCAGTGCACAAGTTAGAGC--TTCGGATAGTACCAAGGTTCTTCTGGTTG 8109
Query 204941 GACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA- 204999
||| ||||| || | |||||||| | |||||| || ||||| |||| | ||||
Sbjct 8110 CTCTTTCGGTTGCATGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCC 8169
Query 205000 TCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCA----CTTGCTTCACGTACATCCCTT 205055
||| || ||| | ||| | | |||||| | ||||| | | | | ||||
Sbjct 8170 TCG-AGGATGGAGTACCAAAGCTTTTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTT 8228
Query 205056 GAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTG 205115
|||||| || |||||| ||| | || ||| |||||| || || || || |
Sbjct 8229 ----CTCGTACTTCTCGTACAGAGCCTCGAACTCATCACCGTAGACATCAGCCAAGCCAG 8284
Query 205116 GACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTC---ACCCTCTCCATAA 205172
| || | ||||| ||||| |||| |||| || | ||| ||| || | || ||| |
Sbjct 8285 GGCACTCATTGGGGCACATAAGAGTCCAC-TCGG--CGTTCTTCTCGACACGCTTCATGA 8341
Query 205173 ACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAA 205232
| || ||| ||||||| | | || || ||||| || || | || | | || | ||
Sbjct 8342 ATAGATCGGGAATCCACAAGGCATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGT 8401
Query 205233 GGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGG 205292
|||||||| || ||| || | | || ||||||||||| ||||| | | | |
Sbjct 8402 GGTTCTTTCGCAGGTCAAGGTACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAG 8461
Query 205293 CCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAA 205352
| | || ||||| | |||||| ||||||||||| || | || | |||||| |
Sbjct 8462 CGAAAGCACCTGGGCGCTTGTTGCCACCCTGGTCAACATATCTAGCAGTGTTGTTGAAGA 8521
Query 205353 CTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392
|||||| ||| || || | ||||||| | | ||||| ||
Sbjct 8522 CTCGCAACATGGGAACAATTCCGTTGGAGTTTCCGTTGGT 8561
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795121694147760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |