Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq332 138 3e-27 seq507 113 1e-19 seq1884 111 4e-19 >seq332 Length=18159 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||||||||| ||||||||||||| |||||| || ||| || | ||||| Sbjct 1803 AGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCTCAACGTACGGCCATCC 1862 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || ||||||||||| || ||||| || ||| Sbjct 1863 TCCAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGGGATTCCCTCCTTATCC 1922 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| ||| ||| || | ||||| | | || || ||||| || || ||| Sbjct 1923 TGAATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGTC 1982 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | ||| || ||||| ||||| Sbjct 1983 TTGCCCGTCAAAGTCTTAACAAAGATTTG 2011 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||||||||| ||||||||||||| ||||||||| | ||| || | ||||| Sbjct 2031 AGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCC 2090 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || |||||||| || || |||||||||||||| ||||| ||| || || || Sbjct 2091 TCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCT 2150 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| ||| |||| | || || || | ||||| ||| Sbjct 2151 TGAATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCAACTTCAAGAGTGATAGTC 2210 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 2211 TTGCCGGTGAGGGTCTTGACGAAGATCTG 2239 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||||| ||||| |||||||| || | ||||||||||| | ||| Sbjct 2533 CGAAGACGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGTG 2592 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || |||||||| || || || ||||||||| ||| || Sbjct 2593 CGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCCGGAGGAATACCC 2652 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| || |||| |||||| | | || || || | Sbjct 2653 TCCTTGTCCTGAATCTTGGACTTGACATTATCGATGGTGTCGCTGGACTCGACTTCAAGG 2712 Query 199589 GTGATCGTCTTACCCGT 199605 ||||| ||||| || || Sbjct 2713 GTGATGGTCTTGCCAGT 2729 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || || || |||||||| |||| ||| ||||| | | || | || || Sbjct 2259 AGAACGAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCGTCC 2318 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| |||||||| || | ||| |||||||| ||| ||| || || ||| Sbjct 2319 TCAAGTTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 2378 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| ||| || | | || || || | ||||| ||| Sbjct 2379 TGAATCTTGGACTTAACATTGTCGATGGTATCGCTGGACTCAACCTCAAGGGTGATGGTC 2438 Query 199598 TTACCCGTGAGAGTTTTCAC 199617 || || ||||| || || || Sbjct 2439 TTGCCGGTGAGGGTCTTGAC 2458 >seq507 Length=44608 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | |||||| || |||||||| |||| ||||||||| | | ||| Sbjct 34508 CGAAGGCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTA 34567 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || ||||| ||||||||||| || |||||||||||||| || || Sbjct 34568 CGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCC 34627 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | || || || | Sbjct 34628 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTGGACTCCACCTCAAGG 34687 Query 199589 GTGATCGTCTTACCCGT 199605 ||||||||||| ||||| Sbjct 34688 GTGATCGTCTTGCCCGT 34704 >seq1884 Length=68653 Score = 111 bits (122), Expect = 4e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||||| | ||| | ||||| || || |||||||||||||| | Sbjct 46976 CCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAA 47035 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | || |||||||||||||| ||| || || ||||| ||||| ||| || | Sbjct 47036 TCAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGT 47095 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||| | || || || ||||| ||||| ||||| || || ||||| || || | Sbjct 47096 CGATCGTGTCGGATGACTCGACCTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTGACGA 47155 Query 199620 A 199620 | Sbjct 47156 A 47156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178870681270857