Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq507 132 5e-26 seq1884 118 1e-21 seq332 113 5e-20 >seq507 Length=44608 Score = 132 bits (146), Expect = 5e-26 Identities = 130/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||| || | || ||||| |||||||||||||| Sbjct 34537 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCATCCTCGAGTTGCTTGCCGGCGAA 34596 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||| | || | || |||||||||| |||||| ||||| | Sbjct 34597 GATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 34656 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | |||||||| || ||||| || | ||||| || |||||||| Sbjct 34657 GTCGATGGTGTCGCTGGACTCCACCTCAAGGGTGATCGTCTTGCCCGT 34704 >seq1884 Length=68653 Score = 118 bits (130), Expect = 1e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || |||||||| | || ||||| ||||| |||||||| | Sbjct 46976 CCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAA 47035 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||||||||| | || | || |||||| ||| |||||| ||||| | Sbjct 47036 TCAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGT 47095 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||||| || || || |||| |||||||| ||||| || || || || || | Sbjct 47096 CGATCGTGTCGGATGACTCGACCTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTGACGA 47155 Query 46584 AGATTTGCAT 46593 || | | ||| Sbjct 47156 AGCTATTCAT 47165 >seq332 Length=18159 Score = 113 bits (124), Expect = 5e-20 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || |||||||| |||| |||||||||||||| ||||| Sbjct 2562 CTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAA 2621 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||| || ||||| | || | | |||||||||| ||||| ||||| | Sbjct 2622 GATCAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACATT 2681 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | |||||||| || || || || | |||||||| ||||| |||| Sbjct 2682 ATCGATGGTGTCGCTGGACTCGACTTCAAGGGTGATGGTCTTGCCAGTCA 2731 Score = 109 bits (120), Expect = 6e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| || |||||||| || ||||| |||| || || |||||||||||||| Sbjct 2279 CTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAA 2338 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || |||||||| | || | || |||||||||| ||||| ||| | | Sbjct 2339 AATCAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTAACATT 2398 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || ||||| || || || || | |||||||| ||||| || || || || || Sbjct 2399 GTCGATGGTATCGCTGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 2458 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||| ||| | || || | || || |||||||| || || || Sbjct 1823 CTCCTTTTGGATGTTGTAATCGCTCAACGTACGGCCATCCTCCAGCTGCTTACCAGCAAA 1882 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | || | | |||||| ||| ||||| ||||| ||| Sbjct 1883 GATCAGTCGCTGCTGGTCAGGTGGGATTCCCTCCTTATCCTGAATCTTTGACTTGA-CGT 1941 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || |||| || || || |||||||||| || |||| Sbjct 1942 TGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTAA 2001 Query 46581 CAAAGATTTGCAT 46593 ||||||||||||| Sbjct 2002 CAAAGATTTGCAT 2014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565214582266920