Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq507 132 5e-26
seq1884 118 1e-21
seq332 113 5e-20
>seq507
Length=44608
Score = 132 bits (146), Expect = 5e-26
Identities = 130/168 (77%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| ||||| || | || ||||| ||||||||||||||
Sbjct 34537 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCATCCTCGAGTTGCTTGCCGGCGAA 34596
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||||||| | || | || |||||||||| |||||| ||||| |
Sbjct 34597 GATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 34656
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | |||||||| || ||||| || | ||||| || ||||||||
Sbjct 34657 GTCGATGGTGTCGCTGGACTCCACCTCAAGGGTGATCGTCTTGCCCGT 34704
>seq1884
Length=68653
Score = 118 bits (130), Expect = 1e-21
Identities = 140/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| |||||||| || |||||||| | || ||||| ||||| |||||||| |
Sbjct 46976 CCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAA 47035
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
||| ||||||||||| | || | || |||||| ||| |||||| ||||| |
Sbjct 47036 TCAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGT 47095
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||||| || || || |||| |||||||| ||||| || || || || || |
Sbjct 47096 CGATCGTGTCGGATGACTCGACCTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTGACGA 47155
Query 46584 AGATTTGCAT 46593
|| | | |||
Sbjct 47156 AGCTATTCAT 47165
>seq332
Length=18159
Score = 113 bits (124), Expect = 5e-20
Identities = 127/170 (75%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || |||||||| || |||||||| |||| |||||||||||||| |||||
Sbjct 2562 CTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAA 2621
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| ||| || ||||| | || | | |||||||||| ||||| ||||| |
Sbjct 2622 GATCAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACATT 2681
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571
| | |||||||| || || || || | |||||||| ||||| ||||
Sbjct 2682 ATCGATGGTGTCGCTGGACTCGACTTCAAGGGTGATGGTCTTGCCAGTCA 2731
Score = 109 bits (120), Expect = 6e-19
Identities = 132/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| || |||||||| || ||||| |||| || || ||||||||||||||
Sbjct 2279 CTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAA 2338
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| || |||||||| | || | || |||||||||| ||||| ||| | |
Sbjct 2339 AATCAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTAACATT 2398
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | || ||||| || || || || | |||||||| ||||| || || || || ||
Sbjct 2399 GTCGATGGTATCGCTGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 2458
Score = 102 bits (112), Expect = 9e-17
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||||||||| ||||| ||| | || || | || || |||||||| || || ||
Sbjct 1823 CTCCTTTTGGATGTTGTAATCGCTCAACGTACGGCCATCCTCCAGCTGCTTACCAGCAAA 1882
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| ||||||||||| | || | | |||||| ||| ||||| ||||| |||
Sbjct 1883 GATCAGTCGCTGCTGGTCAGGTGGGATTCCCTCCTTATCCTGAATCTTTGACTTGA-CGT 1941
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||| || || || |||| || || || |||||||||| || ||||
Sbjct 1942 TGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTAA 2001
Query 46581 CAAAGATTTGCAT 46593
|||||||||||||
Sbjct 2002 CAAAGATTTGCAT 2014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565214582266920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |