Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq481 140 3e-28
seq332 105 7e-18
seq507 96.9 3e-15
seq1884 84.2 2e-11
>seq481
Length=22500
Score = 140 bits (154), Expect = 3e-28
Identities = 197/276 (71%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| || ||||||||| || || | || ||||| | ||||||||| |||||| ||
Sbjct 2482 GTATGTATCGATGAGGAGAGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAA 2541
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
||||| ||||| || ||||| | ||| ||||| ||| |||||||| || ||
Sbjct 2542 TCCGTAGAAGCATCGTGCCTCTGGGATCTGGACTTCACCGCTGAAGCGCTCGACAAGGTT 2601
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
||||||||||| |||||| || ||||| || || || ||||| ||||| | ||
Sbjct 2602 CTCGTTGACGATTCCGTCGGATGCAGCGAAGAATGCAAGAACGTGGGAAATGAAGTAACG 2661
Query 133347 CTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||||| ||| || | | | ||||||| | ||||| ||||| || | ||||||
Sbjct 2662 CTCGTCGTCATTGAGTCTGTTGTTCCAGTCGTGAAGATCCTTAGACAGATCAATCTCCTC 2721
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
||||||| || || |||||||| || ||||||||
Sbjct 2722 TGCGGTCCAGAAAGATGCCTCGGCCTTCTTGTACAT 2757
Score = 95.1 bits (104), Expect = 1e-14
Identities = 338/519 (65%), Gaps = 12/519 (2%)
Strand=Plus/Plus
Query 132603 TTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAG 132662
|||||| || || || || ||||| || || || || ||||| | | || |||
Sbjct 1862 TTTTTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTT 1921
Query 132663 CGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAG---TGCTTGGTGCCGATCAGGTCGAC 132719
| ||| || || || ||||||| |||||| | || |||| | || |||
Sbjct 1922 CTCCATGAAGTCGAATGGGTTGGTAACCTTGTAGACTTTCTCATTGCCAA---GGGCGAG 1978
Query 132720 GAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT-GGTTTCGCAATTAAGTCCCA 132778
|| || | || || |||||||||||||||||| ||| | || | | || | || |
Sbjct 1979 AAGGAGACGATCAGCAACGAACTCGATGTATTGCTTCATCAGATTTG-AGTTCATGCCGA 2037
Query 132779 GCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTG 132837
| ||| |||| || || || || || | || |||||| || | ||| || || |||
Sbjct 2038 GAAGA-GCACAAGGAAGAGCCTCAGTCAAGAATTCTTGCTCAATTGTGACGGCCTCAGTG 2096
Query 132838 ACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAA 132897
| || || ||| | ||| || || ||| ||| || || | | |||
Sbjct 2097 ATGACATCTTGGACGGCTTGCTTGCTTGGGCGGTGCTTCAAGTGGGAAAAAAGAAGGCAT 2156
Query 132898 GCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCG 132957
|| |||||| || | ||||| || | ||| ||||| || ||| |||||| | |||
Sbjct 2157 GCGAAGTCGGTGTGAAGACCCTCATCACGGGAGATGAGCTCATTGGAGAAAGTAAGCCCG 2216
Query 132958 GGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACG 133017
| ||| || || || || || | |||||| |||| ||||| || || |||||||
Sbjct 2217 GCCATCAGACCACGCTTCTTCAACCAAAAGATGGACGCGAATGAACCGGAGAAGAAGATA 2276
Query 133018 CCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGT-GGCTTCTTTGCTGGCGAT 133076
||||| || || ||||| || || || || | | || || | |||||| || | ||
Sbjct 2277 CCCTCAACAGCTGCGAATGCAACAAGACGTTGAGCAAAGGTAGACTTCTTGTCTTG-AAT 2335
Query 133077 CCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115
||| | | ||||| |||||||| | |||| ||| ||
Sbjct 2336 CCATCTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 2374
>seq332
Length=18159
Score = 105 bits (116), Expect = 7e-18
Identities = 155/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| || ||||| | || || ||| || |
Sbjct 2242 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACTATCACTCTTGAAGTTGAGTCCTCA 2183
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| |||| || || | || || ||||| |||||| | || ||
Sbjct 2182 GATACCATCGACAACG-TTAAGTCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGATCA 2124
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||||| ||||| || || || || || | || ||| | |||||||||
Sbjct 2123 GCAGCGTCTCATTTTTGCGGGAAAGCAACTTGAGGATGGCCGTACCTTGTCCGACTACAA 2064
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||||||||| | || || || ||||| || |||
Sbjct 2063 CATCCAAAAGGAGTCTACTCTCCACTTGGTCCTTCGT 2027
Score = 96.9 bits (106), Expect = 3e-15
Identities = 153/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || || || || | |||||||| || || || | || |||||| || |
Sbjct 2014 ATGCAAATCTTTGTTAAGACTTTGACGGGCAAGACTATTACATTGGAAGTCGAGTCCTCG 1955
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || |||| | || ||| || | || || |||||||| || | |||||
Sbjct 1954 GACACGATTGACAACG-TCAAGTCAAAGATTCAGGATAAGGAGGGAATCCCACCTGACCA 1896
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | || || || |||||||| || | || || | | ||| |||||
Sbjct 1895 GCAGCGACTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACGTTGAGCGATTACAA 1836
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||||||||| | || || || ||||| || |||
Sbjct 1835 CATCCAAAAGGAGTCTACTCTCCACTTGGTCCTTCGT 1799
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327
|| ||||| ||||||||| | || |||||| ||| ||||| | | | | | ||
Sbjct 2729 ACTGGCAAGACCATCACCCTTGAAGTCGAGTCCAGCGACACCATCGATAATGTCAAGTCC 2670
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| || | ||||| ||||| ||||| | |||||||| || || || | ||| |||||
Sbjct 2669 AAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAACAACGCCTGATCTTCGCTGGCAAG 2610
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||||| || |||| ||||| ||| ||||||||||| || ||||| | || || ||
Sbjct 2609 CAGCTCGAGGACGGTCGCACTCTCTCTGACTACAACATTCAGAAGGAGTCCACTCTTCAC 2550
Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470
| || || ||| | | |||||
Sbjct 2549 CTTGTTCTCCGTCTTCGTGGCGG 2527
>seq507
Length=44608
Score = 96.9 bits (106), Expect = 3e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327
|||||||| || |||||| | || || ||| ||| ||||| | | | | | ||
Sbjct 34704 ACGGGCAAGACGATCACCCTTGAGGTGGAGTCCAGCGACACCATCGACAATGTCAAGTCC 34645
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| || ||| | ||||| ||||| || || | ||| |||||
Sbjct 34644 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 34585
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|| || || || | || || ||| ||||||||||||||| ||||| | || || ||
Sbjct 34584 CAACTCGAGGATGGCCGTACTCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 34525
Query 38448 TTGGTGCTGCG 38458
||||| || ||
Sbjct 34524 TTGGTTCTCCG 34514
>seq1884
Length=68653
Score = 84.2 bits (92), Expect = 2e-11
Identities = 127/181 (70%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || || ||||| |||||||| | || |||||| | |||||| |
Sbjct 47156 TTCGTCAAGACTCTTACTGGCAAGACCATCACTTTGGAGGTCGAGTCATCCGACACGATC 47097
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| || || ||||| |||||| | ||||| ||||| ||
Sbjct 47096 GACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAGCAGCGACTG 47037
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|||| ||| || || || || || || | ||||| || |||||||||||||| |||
Sbjct 47036 ATTTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTTTCTGACTACAACATCCAGAAG 46977
Query 38433 G 38433
|
Sbjct 46976 G 46976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500151723968640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |