Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq481 140 3e-28 seq332 105 7e-18 seq507 96.9 3e-15 seq1884 84.2 2e-11 >seq481 Length=22500 Score = 140 bits (154), Expect = 3e-28 Identities = 197/276 (71%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| || ||||||||| || || | || ||||| | ||||||||| |||||| || Sbjct 2482 GTATGTATCGATGAGGAGAGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAA 2541 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||||| || ||||| | ||| ||||| ||| |||||||| || || Sbjct 2542 TCCGTAGAAGCATCGTGCCTCTGGGATCTGGACTTCACCGCTGAAGCGCTCGACAAGGTT 2601 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||||||||||| |||||| || ||||| || || || ||||| ||||| | || Sbjct 2602 CTCGTTGACGATTCCGTCGGATGCAGCGAAGAATGCAAGAACGTGGGAAATGAAGTAACG 2661 Query 133347 CTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| ||| || | | | ||||||| | ||||| ||||| || | |||||| Sbjct 2662 CTCGTCGTCATTGAGTCTGTTGTTCCAGTCGTGAAGATCCTTAGACAGATCAATCTCCTC 2721 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||| || || |||||||| || |||||||| Sbjct 2722 TGCGGTCCAGAAAGATGCCTCGGCCTTCTTGTACAT 2757 Score = 95.1 bits (104), Expect = 1e-14 Identities = 338/519 (65%), Gaps = 12/519 (2%) Strand=Plus/Plus Query 132603 TTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAG 132662 |||||| || || || || ||||| || || || || ||||| | | || ||| Sbjct 1862 TTTTTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTT 1921 Query 132663 CGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAG---TGCTTGGTGCCGATCAGGTCGAC 132719 | ||| || || || ||||||| |||||| | || |||| | || ||| Sbjct 1922 CTCCATGAAGTCGAATGGGTTGGTAACCTTGTAGACTTTCTCATTGCCAA---GGGCGAG 1978 Query 132720 GAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT-GGTTTCGCAATTAAGTCCCA 132778 || || | || || |||||||||||||||||| ||| | || | | || | || | Sbjct 1979 AAGGAGACGATCAGCAACGAACTCGATGTATTGCTTCATCAGATTTG-AGTTCATGCCGA 2037 Query 132779 GCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTG 132837 | ||| |||| || || || || || | || |||||| || | ||| || || ||| Sbjct 2038 GAAGA-GCACAAGGAAGAGCCTCAGTCAAGAATTCTTGCTCAATTGTGACGGCCTCAGTG 2096 Query 132838 ACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAA 132897 | || || ||| | ||| || || ||| ||| || || | | ||| Sbjct 2097 ATGACATCTTGGACGGCTTGCTTGCTTGGGCGGTGCTTCAAGTGGGAAAAAAGAAGGCAT 2156 Query 132898 GCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCG 132957 || |||||| || | ||||| || | ||| ||||| || ||| |||||| | ||| Sbjct 2157 GCGAAGTCGGTGTGAAGACCCTCATCACGGGAGATGAGCTCATTGGAGAAAGTAAGCCCG 2216 Query 132958 GGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACG 133017 | ||| || || || || || | |||||| |||| ||||| || || ||||||| Sbjct 2217 GCCATCAGACCACGCTTCTTCAACCAAAAGATGGACGCGAATGAACCGGAGAAGAAGATA 2276 Query 133018 CCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGT-GGCTTCTTTGCTGGCGAT 133076 ||||| || || ||||| || || || || | | || || | |||||| || | || Sbjct 2277 CCCTCAACAGCTGCGAATGCAACAAGACGTTGAGCAAAGGTAGACTTCTTGTCTTG-AAT 2335 Query 133077 CCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115 ||| | | ||||| |||||||| | |||| ||| || Sbjct 2336 CCATCTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 2374 >seq332 Length=18159 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| || ||||| | || || ||| || | Sbjct 2242 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACTATCACTCTTGAAGTTGAGTCCTCA 2183 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| |||| || || | || || ||||| |||||| | || || Sbjct 2182 GATACCATCGACAACG-TTAAGTCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGATCA 2124 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||||| ||||| || || || || || | || ||| | ||||||||| Sbjct 2123 GCAGCGTCTCATTTTTGCGGGAAAGCAACTTGAGGATGGCCGTACCTTGTCCGACTACAA 2064 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || || ||||| || ||| Sbjct 2063 CATCCAAAAGGAGTCTACTCTCCACTTGGTCCTTCGT 2027 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | |||||||| || || || | || |||||| || | Sbjct 2014 ATGCAAATCTTTGTTAAGACTTTGACGGGCAAGACTATTACATTGGAAGTCGAGTCCTCG 1955 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || ||| || | || || |||||||| || | ||||| Sbjct 1954 GACACGATTGACAACG-TCAAGTCAAAGATTCAGGATAAGGAGGGAATCCCACCTGACCA 1896 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || |||||||| || | || || | | ||| ||||| Sbjct 1895 GCAGCGACTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACGTTGAGCGATTACAA 1836 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || || ||||| || ||| Sbjct 1835 CATCCAAAAGGAGTCTACTCTCCACTTGGTCCTTCGT 1799 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 || ||||| ||||||||| | || |||||| ||| ||||| | | | | | || Sbjct 2729 ACTGGCAAGACCATCACCCTTGAAGTCGAGTCCAGCGACACCATCGATAATGTCAAGTCC 2670 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || || | ||||| ||||| ||||| | |||||||| || || || | ||| ||||| Sbjct 2669 AAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAACAACGCCTGATCTTCGCTGGCAAG 2610 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| ||||| ||| ||||||||||| || ||||| | || || || Sbjct 2609 CAGCTCGAGGACGGTCGCACTCTCTCTGACTACAACATTCAGAAGGAGTCCACTCTTCAC 2550 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 | || || ||| | | ||||| Sbjct 2549 CTTGTTCTCCGTCTTCGTGGCGG 2527 >seq507 Length=44608 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 |||||||| || |||||| | || || ||| ||| ||||| | | | | | || Sbjct 34704 ACGGGCAAGACGATCACCCTTGAGGTGGAGTCCAGCGACACCATCGACAATGTCAAGTCC 34645 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || ||| | ||||| ||||| || || | ||| ||||| Sbjct 34644 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 34585 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 || || || || | || || ||| ||||||||||||||| ||||| | || || || Sbjct 34584 CAACTCGAGGATGGCCGTACTCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 34525 Query 38448 TTGGTGCTGCG 38458 ||||| || || Sbjct 34524 TTGGTTCTCCG 34514 >seq1884 Length=68653 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || || ||||| |||||||| | || |||||| | |||||| | Sbjct 47156 TTCGTCAAGACTCTTACTGGCAAGACCATCACTTTGGAGGTCGAGTCATCCGACACGATC 47097 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| || || ||||| |||||| | ||||| ||||| || Sbjct 47096 GACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAGCAGCGACTG 47037 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 |||| ||| || || || || || || | ||||| || |||||||||||||| ||| Sbjct 47036 ATTTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTTTCTGACTACAACATCCAGAAG 46977 Query 38433 G 38433 | Sbjct 46976 G 46976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500151723968640