Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2981 434 1e-116 seq3177 179 5e-40 seq2643 141 1e-28 seq2637 93.3 5e-14 >seq2981 Length=90661 Score = 434 bits (480), Expect = 1e-116 Identities = 1056/1589 (66%), Gaps = 27/1589 (2%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| ||| | || ||||| || || || | ||| || ||||| || || || Sbjct 27541 TCATCCTCAGCCTTGTACTTCTCAGCCTCGGCCAACATACGCTCGATGTCCTCCTTGGAC 27482 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || ||||| ||| || | || || || | |||| || | Sbjct 27481 AGACGGCCCTTGTCGTTGGTAATGACAATTTTGTTAGACTTGCCAGTACCCTTCTCGAGA 27422 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| || || | ||||| || ||||| |||||||| | || | ||||| || | Sbjct 27421 GCAGAGACGTTTATGATACCGTTGGCATCGACATCGAAGGTGACCTCGATTTGAGGAACA 27362 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || || | ||| ||||| || | || || | || | | |||| ||| | Sbjct 27361 CCACGGGGCGCAGGTGGGATACCAGTGAGCTCGAACTTGCCCAACAGGTTGTTGTCCTTG 27302 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | ||||||||| || |||||| || || ||||||| ||||| Sbjct 27301 GTGCGTTGACGTTCACCCTCGAAGACTTGGATGAGGACACCAGGTTGGTTATCGGAGAAG 27242 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||| | | | ||||| | ||||| || || || | ||||| | | |||| Sbjct 27241 GTAGAGAAAACCTCTGACTTCTTGGTGGGAATAGTGGTGTTGCGGGGAATGAGCTTGGTC 27182 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || ||||| ||| |||| || | |||| || | ||| || ||| |||| | Sbjct 27181 ATCTGGCCACCAGCAGTCTCGATACCGATGGACAATGGCGCCACATC---GAGCAACAAG 27125 Query 6989 ---TC-----TTGAAC-AGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTC 7039 || |||| |||| | | ||||| | | ||||| || ||||| | Sbjct 27124 ATCTCGTTGGTTGACTTAGATGAGGTG---TCACCAGAGAGAATGGCAGCCTGGACGGCG 27068 Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| ||||| |||||||||||||| || | || || | || || ||||| || Sbjct 27067 GCACCGTAGGCGACGGCCTCATCGGGGTTGATTGACTTGTTGGGCTCCTTGCCGTTGAAG 27008 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 || || | | | | |||||| || || || || || || || || | |||||| Sbjct 27007 TAGTCGGTGATGAGCTTTTGAATACGGGGAATACGGGTGGAACCTCCAACGAGAACGATC 26948 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | || || || ||||| ||||| | ||| ||| ||||| || | Sbjct 26947 TCGTGGACCTTTGACTTATCAATCTTGGCGTCAGCAAGGACACGGTCGACTGGGGTGGTG 26888 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 | ||||| | |||| || || ||||| || || |||||||| ||||| || ||| Sbjct 26887 GTTGATCGGAAGAGGTCCTGGCAAAGCTCCTCGAACCGAGCACGGGTGATGGAGGTGTAG 26828 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 ||||||| || ||| | | || || |||||||||| ||||| || | || || | Sbjct 26827 AAATCAATACCCTCGAAGAGAGAGTCGATTTCAATGGAGGTTTGGGCGGATGAGGAGAGG 26768 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 |||||||| || ||||| || || || || | |||||| || ||||| | ||| || Sbjct 26767 GTTCGCTTGGCACGCTCGCAAGCAGTGCGGAGACGACGGAGAGCACGAGCGTTGGAAGAT 26708 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 | ||||||||| || || || || ||||| | |||||| | || | ||| Sbjct 26707 AAATCTTTCTTGTGCTTGCGCTTGAACTCGTTGACGAAGTGGTTGACCAGACGGTTGTCG 26648 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || |||||||||||||| ||||| || || || | ||||| || |||||||| | Sbjct 26647 AAGTCCTCACCACCCAAGTGAGTATCACCAGCAGTAGACTTGACCTCGAAGATACCCTCC 26588 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 |||||| | || | || ||||| || || || ||||| || || || ||||| ||||| Sbjct 26587 TCAATGGTCAAAAGAGAGACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGGACGTTG 26528 Query 7580 GTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTA 7639 ||| | || ||||| || | |||||| || || || || || || || ||||| Sbjct 26527 CGCTCGCCCTCAACCTTCTTGTCCAAACCGTAGGCAATGGCGGCTGCGGTAGGCTCATTG 26468 Query 7640 ATAATACGAAGACAGTTCAGGCCAGCAAT-AGTTGCC-GCATCTTTCGTCGCTTGTCGTT 7697 || || || ||| ||| ||||||||||| || ||| || || || || ||||| |||| Sbjct 26467 ATGATTCGGAGAACGTTGAGGCCAGCAATCAG--GCCAGCGTCCTTGGTGGCTTGACGTT 26410 Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757 | || || | |||||||| ||||| || ||||| |||| |||| | ||| || | Sbjct 26409 GTGAGTCAGTGAAGTAGGCAGGGACAGTAACGACAGCGTTGTTGACGGTTCCACCAAGGT 26350 Query 7758 ACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA 7817 | | || || | ||| |||| ||| | | ||||||||| ||||| |||| | | Sbjct 26349 AGGCCTCAGCAGTCTCTCTCATCTTGACCAAGATCATCGATGAGATCTCCTCAGGAGTGA 26290 Query 7818 ACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGC-ACCGGGG 7876 | || ||| | || || || || ||||| |||| | || || ||| | || | || || Sbjct 26289 ATTGCTTCTTCTCGCCCTTGAACTCAACCTCAACGACTGGCTT-TCCACCGCGATCGAGG 26231 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 ||||| | | | | |||||||| | || |||| |||| | ||||| | Sbjct 26230 ---ACCTTGAATGGGAAGTGCTTCATATCAGCCTGAACCTCAGGGTCTGCGAACTTGCGA 26174 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 |||||||||||||| ||||| || || ||||| |||||||| || ||| || ||| Sbjct 26173 CCGATAAGACGCTTAGCATCGAAGACAGTGTTCGCAGGGTTCATAGCGACTTGATTTTTC 26114 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || ||||| ||||| ||| || ||||| || |||||| | || ||||| || Sbjct 26113 GCAGCATCTCCGATCAGACGCTCAGTA---TCCGTGAAGGCGACGAAGGAGGGGGTGGTG 26057 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 || || ||||| ||||| ||||| ||||| | ||||| | | ||| || || || Sbjct 26056 CGGTTGCCTTGATCGTTGGCAATGATTTCGATTCGGTCATCGCGGAAGATACCCACACAG 25997 Query 8117 GAATACGTTGTTCCTAAATCAATACCGAT 8145 || || || ||||| | |||||| ||||| Sbjct 25996 GAGTAGGTAGTTCCAAGATCAATTCCGAT 25968 >seq3177 Length=131459 Score = 179 bits (198), Expect = 5e-40 Identities = 353/519 (68%), Gaps = 15/519 (3%) Strand=Plus/Plus Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGA 7302 ||| ||||| ||||| |||||||| || | | |||||| | || || | | || Sbjct 115500 CAGATCCTCGAAACGAGCACGGGTGATTTGGGCGTTGAAATCCTCTCCATCAAACAGGGA 115559 Query 7303 ATCAATTTCAATGGTTGTTTGTG--CCGTCGAAGATAACGTTCGCTTTGCGCGCTCACAC 7360 ||||||||||| || || || | |||| | || | |||||||| || ||||| || Sbjct 115560 ATCAATTTCAACAGTGGTCTGAGCACCGTTG--GAAAGAGTTCGCTTAGCACGCTCGCAA 115617 Query 7361 GCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGT 7420 || || || | ||| | ||||||||| |||| ||| ||||| ||||| || || Sbjct 115618 GCGGTACGGAGACGTCTAAGGGCACGGGGGTCGTTGGACATATCCTTCTTGGTCTTGCGC 115677 Query 7421 TTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 | ||||| | |||||| ||| | | | ||||||||| | || |||||||| Sbjct 115678 TGGAACTCCTTCTTGAAGTGCTCAAGCAAGTTGGTATCGAAATCCTGTCCTCCCAAGTGG 115737 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 ||||| || || || || ||||| || | |||||| | |||||| | | || ||| Sbjct 115738 GTATCACCAGCAGTAGCCTTGACAGTGAAAACACCTCCCTGAATGTTGAGGAGGGAGACA 115797 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG-TCGTCTTTGTTCTT 7599 || || || |||||||| || ||| |||| | || || ||| || | ||| ||| Sbjct 115798 TCGAAAGTTCCACCACCGAGATCATAAATCAAAACATT----TCGCTCCTTGTTGGACTT 115853 Query 7600 ------ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACA 7653 | |||||||||| |||||||| || || || || || || || ||||||||| Sbjct 115854 TCCAGCACCGAGACCGTAGGCGATAGCAGCGGCAGTAGGCTCGTTGATGATACGAAGAAC 115913 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 ||| || ||||| || | | ||||| || || ||||| || || ||||| ||||| Sbjct 115914 GTTGAGACCAGCGATGGCACCGGCATCCTTGGTAGCTTGACGCTGGTTGTCGTTGAAGTA 115973 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || || || || | || || | | ||| ||||| || Sbjct 115974 TGCGGGAACAGTGATAACGGCCTTGGAGACCTTCTTGCC 116012 >seq2643 Length=14262 Score = 141 bits (156), Expect = 1e-28 Identities = 239/344 (69%), Gaps = 13/344 (4%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| ||||| |||||||| || || || ||||| | || || || | ||| Sbjct 1796 ATCGAAATCCTCACCTCCCAAGTGGGTGTCACCGGCGGTGGAAAGAACCTCGAAAACACC 1855 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAA---AATGAG 7572 | || || | | |||||||| || || || ||||| || || | ||||| Sbjct 1856 ACGGTCGATAGAGAGGAGGGAAACATCGAAGGTTCCTCCACCGAGATCGTAGACAATGAT 1915 Query 7573 T--ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 | ||| || || | | |||| |||||||||||||| ||||| || || || Sbjct 1916 TTGACGCTC------TC--CATCAGTCTTGTCGAGACCGTACGCAATAGCTGCGGCGGTG 1967 Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 ||||| || | ||||||||| ||||| ||| || || | | ||||| || || ||| Sbjct 1968 GGTTCGTTGACAATACGAAGGACGTTCAAGCCGGCGATGATACCGGCATCCTTTGTAGCT 2027 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 |||| || ||||| ||||| || || || || ||||| |||| ||||| || || Sbjct 2028 TGTCTCTGGTTGTCGTTGAAGTATGCGGGTACAGTAACGACGGCGTGGGTGACCTTGTTT 2087 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794 |||||||| ||||| |||| || ||||| ||| ||||| ||| Sbjct 2088 CCGAGATAAGATTCTGCGACTTCCTTCATCTTGCCAAGAATCAT 2131 >seq2637 Length=17558 Score = 93.3 bits (102), Expect = 5e-14 Identities = 460/721 (64%), Gaps = 21/721 (3%) Strand=Plus/Plus Query 105284 ACTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCG 105343 |||||| |||||| || ||||| || || | || ||||||| || || ||||| Sbjct 8051 ACTCCACAATTTCAGTGCACAAGTTAGAGCTTCGGATAGTACCAAGGTTCTTCTGGTTGC 8110 Query 105344 ACTTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATT 105403 |||| || || || || ||||| ||||| ||||| |||| || || |||| | | Sbjct 8111 TCTTTCGGTTGCATGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCT 8170 Query 105404 TAATAATTGCTTTCCAAATCTCCGAAGC--TGGTACAACTTTAG----TTGCGATACCTT 105457 | || | | ||||| || ||| || || ||| | |||| | |||| Sbjct 8171 CGAGGATGGAGTACCAAAGCTTTTGAGCCTTGATAGT-CTTGCGACCCTTGCCCT-CCTT 8228 Query 105458 CAGATTCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCT 105517 | ||||| |||||||| ||| | || ||||| | |||||| || || | | | || Sbjct 8229 C----TCGTACTTCTCGTACAGAGCCTCGAACTCATCACCGTAGACATCAGCCA-AGCCA 8283 Query 105518 TTGC-CTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAAC 105576 || || || || || | | | ||| | | | || || || |||||||| Sbjct 8284 GGGCACTCATTGGGGCACATAAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAAT 8343 Query 105577 AAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGA 105636 | ||| |||||||||| ||| | ||||| || ||| | | || || | || || Sbjct 8344 AGATCGGGAATCCACAAGGCATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGTGG 8403 Query 105637 TTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCA 105696 ||| || | || || | |||| || ||||||||||||||| || | |||| || Sbjct 8404 TTCTTTCGCAGGTCAAGGTACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCG 8463 Query 105697 ATAGACCCTTTACGAC----GCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACAC 105752 | || ||| || ||| | || | | |||||||| || || ||| | || Sbjct 8464 AAAGCACCTGGGCGCTTGTTGCCACCCTGG-TCAACATATCTAGCAGTGTTGTTGAAGAC 8522 Query 105753 TCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATT 105812 ||| ||||| |||| ||| || | ||| |||| || || ||| || | | | | Sbjct 8523 TCGCAACATGGGAACAATTCCGTTGGAGTTTCCGTTGGTACCAGCGATGTAGGCACCAGT 8582 Query 105813 TGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACA 105872 ||||| | ||| | || || |||||||| || || ||| || ||||| Sbjct 8583 GGCACGAATTCTGTGGATGTTTAGACCAATACCTCCCGCATTCTTGGAAATCATGGCACA 8642 Query 105873 CTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACA 105932 | || | || ||||| || ||||| || ||||||||||| | | | ||||| || Sbjct 8643 GGCCTTGAGGGTGTCGTAGATGCCGTCAATGCTATCTTCCTTCATGTCGACAAGGAAGCA 8702 Query 105933 CGATGACATTTGTGGTCTG-GGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGA 105991 || || | || | ||| || |||||||| || || || |||| ||||||| ||| Sbjct 8703 TGAAGAAAGCTG-AGCCTGTGGCGTACCAGCGGCAAAGAGTGTGGGTGATGCATGAGTGA 8761 Query 105992 A 105992 | Sbjct 8762 A 8762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635106037091640