Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq2981 434 1e-116
seq3177 179 5e-40
seq2643 141 1e-28
seq2637 93.3 5e-14
>seq2981
Length=90661
Score = 434 bits (480), Expect = 1e-116
Identities = 1056/1589 (66%), Gaps = 27/1589 (2%)
Strand=Plus/Minus
Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628
||||| ||| | || ||||| || || || | ||| || ||||| || || ||
Sbjct 27541 TCATCCTCAGCCTTGTACTTCTCAGCCTCGGCCAACATACGCTCGATGTCCTCCTTGGAC 27482
Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688
| | ||||| || || ||||| ||| || | || || || | |||| || |
Sbjct 27481 AGACGGCCCTTGTCGTTGGTAATGACAATTTTGTTAGACTTGCCAGTACCCTTCTCGAGA 27422
Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748
||| || || | ||||| || ||||| |||||||| | || | ||||| || |
Sbjct 27421 GCAGAGACGTTTATGATACCGTTGGCATCGACATCGAAGGTGACCTCGATTTGAGGAACA 27362
Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808
|| | || || | ||| ||||| || | || || | || | | |||| ||| |
Sbjct 27361 CCACGGGGCGCAGGTGGGATACCAGTGAGCTCGAACTTGCCCAACAGGTTGTTGTCCTTG 27302
Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868
| | ||||||||| || |||||| || || ||||||| |||||
Sbjct 27301 GTGCGTTGACGTTCACCCTCGAAGACTTGGATGAGGACACCAGGTTGGTTATCGGAGAAG 27242
Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928
|| ||||| | | | ||||| | ||||| || || || | ||||| | | ||||
Sbjct 27241 GTAGAGAAAACCTCTGACTTCTTGGTGGGAATAGTGGTGTTGCGGGGAATGAGCTTGGTC 27182
Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988
|| ||||| ||| |||| || | |||| || | ||| || ||| |||| |
Sbjct 27181 ATCTGGCCACCAGCAGTCTCGATACCGATGGACAATGGCGCCACATC---GAGCAACAAG 27125
Query 6989 ---TC-----TTGAAC-AGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTC 7039
|| |||| |||| | | ||||| | | ||||| || ||||| |
Sbjct 27124 ATCTCGTTGGTTGACTTAGATGAGGTG---TCACCAGAGAGAATGGCAGCCTGGACGGCG 27068
Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099
|| ||||| ||||| |||||||||||||| || | || || | || || ||||| ||
Sbjct 27067 GCACCGTAGGCGACGGCCTCATCGGGGTTGATTGACTTGTTGGGCTCCTTGCCGTTGAAG 27008
Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159
|| || | | | | |||||| || || || || || || || || | ||||||
Sbjct 27007 TAGTCGGTGATGAGCTTTTGAATACGGGGAATACGGGTGGAACCTCCAACGAGAACGATC 26948
Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219
|| | || || || ||||| ||||| | ||| ||| ||||| || |
Sbjct 26947 TCGTGGACCTTTGACTTATCAATCTTGGCGTCAGCAAGGACACGGTCGACTGGGGTGGTG 26888
Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279
| ||||| | |||| || || ||||| || || |||||||| ||||| || |||
Sbjct 26887 GTTGATCGGAAGAGGTCCTGGCAAAGCTCCTCGAACCGAGCACGGGTGATGGAGGTGTAG 26828
Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339
||||||| || ||| | | || || |||||||||| ||||| || | || || |
Sbjct 26827 AAATCAATACCCTCGAAGAGAGAGTCGATTTCAATGGAGGTTTGGGCGGATGAGGAGAGG 26768
Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399
|||||||| || ||||| || || || || | |||||| || ||||| | ||| ||
Sbjct 26767 GTTCGCTTGGCACGCTCGCAAGCAGTGCGGAGACGACGGAGAGCACGAGCGTTGGAAGAT 26708
Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459
| ||||||||| || || || || ||||| | |||||| | || | |||
Sbjct 26707 AAATCTTTCTTGTGCTTGCGCTTGAACTCGTTGACGAAGTGGTTGACCAGACGGTTGTCG 26648
Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519
|| || |||||||||||||| ||||| || || || | ||||| || |||||||| |
Sbjct 26647 AAGTCCTCACCACCCAAGTGAGTATCACCAGCAGTAGACTTGACCTCGAAGATACCCTCC 26588
Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579
|||||| | || | || ||||| || || || ||||| || || || ||||| |||||
Sbjct 26587 TCAATGGTCAAAAGAGAGACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGGACGTTG 26528
Query 7580 GTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTA 7639
||| | || ||||| || | |||||| || || || || || || || |||||
Sbjct 26527 CGCTCGCCCTCAACCTTCTTGTCCAAACCGTAGGCAATGGCGGCTGCGGTAGGCTCATTG 26468
Query 7640 ATAATACGAAGACAGTTCAGGCCAGCAAT-AGTTGCC-GCATCTTTCGTCGCTTGTCGTT 7697
|| || || ||| ||| ||||||||||| || ||| || || || || ||||| ||||
Sbjct 26467 ATGATTCGGAGAACGTTGAGGCCAGCAATCAG--GCCAGCGTCCTTGGTGGCTTGACGTT 26410
Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757
| || || | |||||||| ||||| || ||||| |||| |||| | ||| || |
Sbjct 26409 GTGAGTCAGTGAAGTAGGCAGGGACAGTAACGACAGCGTTGTTGACGGTTCCACCAAGGT 26350
Query 7758 ACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA 7817
| | || || | ||| |||| ||| | | ||||||||| ||||| |||| | |
Sbjct 26349 AGGCCTCAGCAGTCTCTCTCATCTTGACCAAGATCATCGATGAGATCTCCTCAGGAGTGA 26290
Query 7818 ACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGC-ACCGGGG 7876
| || ||| | || || || || ||||| |||| | || || ||| | || | || ||
Sbjct 26289 ATTGCTTCTTCTCGCCCTTGAACTCAACCTCAACGACTGGCTT-TCCACCGCGATCGAGG 26231
Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936
||||| | | | | |||||||| | || |||| |||| | ||||| |
Sbjct 26230 ---ACCTTGAATGGGAAGTGCTTCATATCAGCCTGAACCTCAGGGTCTGCGAACTTGCGA 26174
Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996
|||||||||||||| ||||| || || ||||| |||||||| || ||| || |||
Sbjct 26173 CCGATAAGACGCTTAGCATCGAAGACAGTGTTCGCAGGGTTCATAGCGACTTGATTTTTC 26114
Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056
|| || || ||||| ||||| ||| || ||||| || |||||| | || ||||| ||
Sbjct 26113 GCAGCATCTCCGATCAGACGCTCAGTA---TCCGTGAAGGCGACGAAGGAGGGGGTGGTG 26057
Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116
|| || ||||| ||||| ||||| ||||| | ||||| | | ||| || || ||
Sbjct 26056 CGGTTGCCTTGATCGTTGGCAATGATTTCGATTCGGTCATCGCGGAAGATACCCACACAG 25997
Query 8117 GAATACGTTGTTCCTAAATCAATACCGAT 8145
|| || || ||||| | |||||| |||||
Sbjct 25996 GAGTAGGTAGTTCCAAGATCAATTCCGAT 25968
>seq3177
Length=131459
Score = 179 bits (198), Expect = 5e-40
Identities = 353/519 (68%), Gaps = 15/519 (3%)
Strand=Plus/Plus
Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGA 7302
||| ||||| ||||| |||||||| || | | |||||| | || || | | ||
Sbjct 115500 CAGATCCTCGAAACGAGCACGGGTGATTTGGGCGTTGAAATCCTCTCCATCAAACAGGGA 115559
Query 7303 ATCAATTTCAATGGTTGTTTGTG--CCGTCGAAGATAACGTTCGCTTTGCGCGCTCACAC 7360
||||||||||| || || || | |||| | || | |||||||| || ||||| ||
Sbjct 115560 ATCAATTTCAACAGTGGTCTGAGCACCGTTG--GAAAGAGTTCGCTTAGCACGCTCGCAA 115617
Query 7361 GCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGT 7420
|| || || | ||| | ||||||||| |||| ||| ||||| ||||| || ||
Sbjct 115618 GCGGTACGGAGACGTCTAAGGGCACGGGGGTCGTTGGACATATCCTTCTTGGTCTTGCGC 115677
Query 7421 TTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480
| ||||| | |||||| ||| | | | ||||||||| | || ||||||||
Sbjct 115678 TGGAACTCCTTCTTGAAGTGCTCAAGCAAGTTGGTATCGAAATCCTGTCCTCCCAAGTGG 115737
Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540
||||| || || || || ||||| || | |||||| | |||||| | | || |||
Sbjct 115738 GTATCACCAGCAGTAGCCTTGACAGTGAAAACACCTCCCTGAATGTTGAGGAGGGAGACA 115797
Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG-TCGTCTTTGTTCTT 7599
|| || || |||||||| || ||| |||| | || || ||| || | ||| |||
Sbjct 115798 TCGAAAGTTCCACCACCGAGATCATAAATCAAAACATT----TCGCTCCTTGTTGGACTT 115853
Query 7600 ------ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACA 7653
| |||||||||| |||||||| || || || || || || || |||||||||
Sbjct 115854 TCCAGCACCGAGACCGTAGGCGATAGCAGCGGCAGTAGGCTCGTTGATGATACGAAGAAC 115913
Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713
||| || ||||| || | | ||||| || || ||||| || || ||||| |||||
Sbjct 115914 GTTGAGACCAGCGATGGCACCGGCATCCTTGGTAGCTTGACGCTGGTTGTCGTTGAAGTA 115973
Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752
|| || || || | || || | | ||| ||||| ||
Sbjct 115974 TGCGGGAACAGTGATAACGGCCTTGGAGACCTTCTTGCC 116012
>seq2643
Length=14262
Score = 141 bits (156), Expect = 1e-28
Identities = 239/344 (69%), Gaps = 13/344 (4%)
Strand=Plus/Plus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
||||||||| ||||| |||||||| || || || ||||| | || || || | |||
Sbjct 1796 ATCGAAATCCTCACCTCCCAAGTGGGTGTCACCGGCGGTGGAAAGAACCTCGAAAACACC 1855
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAA---AATGAG 7572
| || || | | |||||||| || || || ||||| || || | |||||
Sbjct 1856 ACGGTCGATAGAGAGGAGGGAAACATCGAAGGTTCCTCCACCGAGATCGTAGACAATGAT 1915
Query 7573 T--ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630
| ||| || || | | |||| |||||||||||||| ||||| || || ||
Sbjct 1916 TTGACGCTC------TC--CATCAGTCTTGTCGAGACCGTACGCAATAGCTGCGGCGGTG 1967
Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690
||||| || | ||||||||| ||||| ||| || || | | ||||| || || |||
Sbjct 1968 GGTTCGTTGACAATACGAAGGACGTTCAAGCCGGCGATGATACCGGCATCCTTTGTAGCT 2027
Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750
|||| || ||||| ||||| || || || || ||||| |||| ||||| || ||
Sbjct 2028 TGTCTCTGGTTGTCGTTGAAGTATGCGGGTACAGTAACGACGGCGTGGGTGACCTTGTTT 2087
Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794
|||||||| ||||| |||| || ||||| ||| ||||| |||
Sbjct 2088 CCGAGATAAGATTCTGCGACTTCCTTCATCTTGCCAAGAATCAT 2131
>seq2637
Length=17558
Score = 93.3 bits (102), Expect = 5e-14
Identities = 460/721 (64%), Gaps = 21/721 (3%)
Strand=Plus/Plus
Query 105284 ACTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCG 105343
|||||| |||||| || ||||| || || | || ||||||| || || |||||
Sbjct 8051 ACTCCACAATTTCAGTGCACAAGTTAGAGCTTCGGATAGTACCAAGGTTCTTCTGGTTGC 8110
Query 105344 ACTTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATT 105403
|||| || || || || ||||| ||||| ||||| |||| || || |||| | |
Sbjct 8111 TCTTTCGGTTGCATGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCT 8170
Query 105404 TAATAATTGCTTTCCAAATCTCCGAAGC--TGGTACAACTTTAG----TTGCGATACCTT 105457
| || | | ||||| || ||| || || ||| | |||| | ||||
Sbjct 8171 CGAGGATGGAGTACCAAAGCTTTTGAGCCTTGATAGT-CTTGCGACCCTTGCCCT-CCTT 8228
Query 105458 CAGATTCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCT 105517
| ||||| |||||||| ||| | || ||||| | |||||| || || | | | ||
Sbjct 8229 C----TCGTACTTCTCGTACAGAGCCTCGAACTCATCACCGTAGACATCAGCCA-AGCCA 8283
Query 105518 TTGC-CTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAAC 105576
|| || || || || | | | ||| | | | || || || ||||||||
Sbjct 8284 GGGCACTCATTGGGGCACATAAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAAT 8343
Query 105577 AAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGA 105636
| ||| |||||||||| ||| | ||||| || ||| | | || || | || ||
Sbjct 8344 AGATCGGGAATCCACAAGGCATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGTGG 8403
Query 105637 TTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCA 105696
||| || | || || | |||| || ||||||||||||||| || | |||| ||
Sbjct 8404 TTCTTTCGCAGGTCAAGGTACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCG 8463
Query 105697 ATAGACCCTTTACGAC----GCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACAC 105752
| || ||| || ||| | || | | |||||||| || || ||| | ||
Sbjct 8464 AAAGCACCTGGGCGCTTGTTGCCACCCTGG-TCAACATATCTAGCAGTGTTGTTGAAGAC 8522
Query 105753 TCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATT 105812
||| ||||| |||| ||| || | ||| |||| || || ||| || | | | |
Sbjct 8523 TCGCAACATGGGAACAATTCCGTTGGAGTTTCCGTTGGTACCAGCGATGTAGGCACCAGT 8582
Query 105813 TGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACA 105872
||||| | ||| | || || |||||||| || || ||| || |||||
Sbjct 8583 GGCACGAATTCTGTGGATGTTTAGACCAATACCTCCCGCATTCTTGGAAATCATGGCACA 8642
Query 105873 CTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACA 105932
| || | || ||||| || ||||| || ||||||||||| | | | ||||| ||
Sbjct 8643 GGCCTTGAGGGTGTCGTAGATGCCGTCAATGCTATCTTCCTTCATGTCGACAAGGAAGCA 8702
Query 105933 CGATGACATTTGTGGTCTG-GGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGA 105991
|| || | || | ||| || |||||||| || || || |||| ||||||| |||
Sbjct 8703 TGAAGAAAGCTG-AGCCTGTGGCGTACCAGCGGCAAAGAGTGTGGGTGATGCATGAGTGA 8761
Query 105992 A 105992
|
Sbjct 8762 A 8762
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635106037091640
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