Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2637 224 1e-53 seq481 123 3e-23 seq274 89.7 6e-13 >seq2637 Length=17558 Score = 224 bits (248), Expect = 1e-53 Identities = 1174/1825 (64%), Gaps = 73/1825 (4%) Strand=Plus/Minus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTC-TTGAT 111604 |||||||| |||||||||| ||| | || |||| | || ||||| ||| | Sbjct 8921 TATTTTGGATTCAAGACCCTTGAGCGATCATATCTCCTCCGTCTCGATGGCAAGATTGCT 8862 Query 111605 GGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGA 111664 | | ||| || | ||| | ||||| || ||| | || ||||| || || ||||| || Sbjct 8861 G-AGCGCCCTCAACATATGATTATGCGCGTGGCGGTTGGCATCCACGGTGAGGATATCGA 8803 Query 111665 TTCTGTTTTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAA 111723 ||| | | ||||||||| || |||||| | ||| |||| || ||| |||| | Sbjct 8802 GGCTGCTATTGAGACATACAACTTGATGTCAAGCAAGTAC-TTCACTCATGCATCACCCA 8744 Query 111724 CCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACA 111783 | ||||| ||||||||| ||| | || | || || |||||| | | | | Sbjct 8743 CACTCTTTGCCGCTGGTACGCCACAGGCTCAGCTTTCTTCATGCTTCCTTGTCGACATGA 8684 Query 111784 AGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGT 111843 |||| ||| || | ||||| |||| ||| |||| | |||||| || || ||| Sbjct 8683 AGGAAGATAGCATTGACGGCATCTACGACACCCTCAAGGCCTGTGCCATGATTTCCAAGA 8624 Query 111844 GGGCTGGTGGTATCGGGATGCACATCCAT-GATGTCAGAGCCAACAAGTCTCGTATTAGA 111902 || || ||||| || | ||||||| || || | |||| | || | | | Sbjct 8623 ATGCGGGAGGTATTGGTCTAAACATCCACAGAATTC-GTGCCA-CTGGTGCCTACATCGC 8566 Query 111903 -GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 111961 ||||| || || | || | || ||| |||| ||| | || || || ||| ||| || Sbjct 8565 TGGTACCAACGGAAACTCCAACGGAATTGTTCCCATGTTGCGAGTCTTCAACAACACTGC 8506 Query 111962 GCGCTATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGA 112015 | ||||| |||| | ||| ||| | || | | || |||| |||| || || Sbjct 8505 TAGATATGTTGACCAGGGTGGCAACAAGCGCC-CAGGTG--CTTTCGCTATCTACCTCGA 8449 Query 112016 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGA 112075 |||||||||||| ||| | | |||| |||||| |||| ||||| || | ||||| Sbjct 8448 GCCATGGCACGCCGATGTTTTCGAGTACCTTGACCTGCGAAAGAACCACGGCAAGGAGGA 8389 Query 112076 GGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 112134 | || ||| ||||||||||||| || | |||||||| ||||| ||||||||| | | Sbjct 8388 AGTTCG-TGCTCGCGATCTCTTCTATGCCTTGTGGATTCCCGATCTATTCATGAAGCGTG 8330 Query 112135 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATG 112194 | ||| ||| | | | ||| |||| | || || | || || || | | |||| Sbjct 8329 TCGAGAAGAACGCCGAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGCTTGGCTGATG 8270 Query 112195 CCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTG 112254 | ||||| ||||| || || || ||| |||||||| |||| | | | | | | | Sbjct 8269 TCTACGGTGATGAGTTCGAGGCTCTGTACGAGAAGTACGA-GAAGGAGGGCAAGGGTC-G 8212 Query 112255 C--GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGG 112312 | ||| | ||| | | ||| | | || ||| || ||||||||||||| || Sbjct 8211 CAAGACTATCAAGGCTCAAAAGCTTTGGTACTCCATCCTCGAGGCTCAAACCGAGACCGG 8152 Query 112313 TACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGG 112372 | |||| ||||| ||||| || || || |||| |||||| || || ||||| | || Sbjct 8151 AAACCCATTCATGCTCTACAAGGATGCATGCAACCGAAAGAGCAACCAGAAGAACCTTGG 8092 Query 112373 TGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 112432 | ||| || || ||| | || || ||||| |||| | | ||| |||| Sbjct 8091 TACTATCCGAAGCTCTAACTTGTGCACTGAAATTGTGGAGTACTCTTCGCCAGACGAGAT 8032 Query 112433 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-- 112490 ||||| || ||| | || || | || ||||| | ||||| || || |||| | Sbjct 8031 TGCTGTCTGCAACTTGGCCTCCCTTGCGCTCCCGACTTATGTTGA--CATGAACAACGGC 7974 Query 112491 ACATTTGATTATGAAAAACTCCACGAAGT-TACGAAAAC--TGTCACAAAAAACCTAAAC 112547 |||| || | || || |||||||| || | | || | |||| || ||| ||||| Sbjct 7973 ACATACGACTTTGCCAAGCTCCACGAGGTCTGCCAAGTCGTTGTC---AAGAACTTAAAC 7917 Query 112548 AGAGTTATTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGA 112604 | | | || |||| || | ||||| ||| ||| | || || | || | | Sbjct 7916 AAAATCATCGATATCAACTACTACCCAGTTCCCGAGGCGAGACG--AAGC-AACTTTCGT 7860 Query 112605 CACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT---TCTTTGTCGC 112661 ||||| || |||| | ||||| |||||||| || |||| ||| | || ||| Sbjct 7859 CACCGACCCATTGCCGTTGGTGTTCAAGGTCTTGCAGATGCTTTCTTGGCACTCCGTCTT 7800 Query 112662 CACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTAT 112721 | |||| || || || || ||| | |||| | || || ||||| || || Sbjct 7799 C---CATTCGACTCACCTGAGGCCAAGCACCTCAACATCCAAATCTTCGAGACCATCTAC 7743 Query 112722 CACGCCGCTCTTGAGGCGAGTTCG---GAGTTGGCAGAGGTTGATGGTCCATATGAAACC 112778 ||||| ||| |||| | |||| ||| | || || | |||||||| ||||| || Sbjct 7742 CACGCTGCT-TTGA--CCGCTTCGATTGAGCTTGCCAAGATCGATGGTCCTTATGAGACA 7686 Query 112779 TTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGA--TATGTGGGAAGGTGAGA 112836 | |||||| ||||| || || | || | |||||||| ||| |||| || | | | Sbjct 7685 TATGAGGGCTCTCCGGCATCGAAGGGTGAGCTTCAATATGACCTATGGGGCA---TCACC 7629 Query 112837 CCAAGC-TTCACTACGACTGGGA-CGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 112894 || | | || || |||||||| ||| | ||| ||| |||||| | | ||| | || Sbjct 7628 CCCACCGATCTCTGGGACTGGGATAGCT-TGAAGCAACAGATCAAGCAACATGGTATCCG 7570 Query 112895 TAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACA-AATCTTGGGTAATA 112953 |||||| | | | || || |||||||| ||| |||| || | |||||| | | Sbjct 7569 CAACAGTTTGCTTGTCGCTCCTATGCCAACTGCCAGCACCAGTCAGATTCTTGGCT-TCA 7511 Query 112954 ATGAATGCTTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAG 113012 | || |||||||| || ||||| | ||||| || ||| | | || || || ||| Sbjct 7510 ACGAGTGCTTTGAGCCATACACTTCCAACATTTACTCT-CGCCGTGTGCTTGCTGGCGAG 7452 Query 113013 TTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAG 113072 || | | |||||| | || | ||| | ||| || || |||||||| | Sbjct 7451 TTCCAGGTCGTCAACCCTTGGTTGTTGAAGGACTTGGTAGATATGGGCCTCTGGTCTGAC 7392 Query 113073 GATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCA 113132 | |||||| | | ||| | | || |||||||| || || ||| | || ||| Sbjct 7391 AACATGAAGAACCGCATCATCGCTGATGGGGGTTCCATCCAGAACATTCCAAACATCCCA 7332 Query 113133 GATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGA--TGTCATTG 113190 | ||| || || ||||| || |||||||| ||| | || || | | || Sbjct 7331 GCTGATATCAAAGCTCTGTACAAGACCGTTTGGGAGATC--TCTCAACGAACTATTGTTC 7274 Query 113191 ACATGGCCGCAGATCGTGGTCGC-TTCATTGATCAAAGTCAAAGT--ATGAATCTATTCA 113247 | ||||| || || ||||| ||| | ||| |||||| || ||| ||||| | || Sbjct 7273 AGATGGCAGCCGACCGTGG-CGCATACATCGATCAA--TCCCAGTCGATGAACATCCACA 7217 Query 113248 TGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTC 113307 || | |||||| ||| |||| || | |||||| | | |||||| ||| Sbjct 7216 TGAAGGATCCAACCATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGTTGGGAT 7157 Query 113308 TCAAAACGGGGATGTATTACCTCCG 113332 | || || || ||||| |||||||| Sbjct 7156 TGAAGACTGGCATGTACTACCTCCG 7132 >seq481 Length=22500 Score = 123 bits (136), Expect = 3e-23 Identities = 161/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AG 102164 |||||||| || || | ||||| || || |||||| | | ||| || | |||| || Sbjct 2380 ACAGTTCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATTCAAGACAAGAAG 2321 Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 || | |||||||| | || || | ||||| || ||||||||||||||||||||| Sbjct 2320 TC---TACCTTTGCTCAACGTCTTGTTGCATTCGCAGCTGTTGAGGGTATCTTCTTCTCC 2264 Query 102225 GGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 ||||| ||| ||| | || | |||| | |||||||| ||||| ||| | || || || Sbjct 2263 GGTTCATTC-GCGTCCATCTTTTGGTTGAAGAAGCGTGGTCTGATGGCCGGGCTTACTTT 2205 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 |||||| ||||| ||||| ||||| ||||| || ||| Sbjct 2204 CTCCAATGAGCTCATCTCCCGTGATGAGGGTCTTCAC 2168 >seq274 Length=77263 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 163601 GGTGCGGGTGTTATTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTCTTCAATCAT 163660 ||||| || || ||||| | || || || | ||||| ||| | || |||||||| Sbjct 24646 GGTGCTGGAGTCATTGACGCTGATTATCGCGGCCAGGTCAAGGTCCTGCTTTTCAATCAC 24705 Query 163661 GGAGACAAAGACTTTGAGGTAAAGAGGGGGGAGCGCATCGCACAACTTGTTCTTGAGAGG 163720 || || || |||||||| || ||| ||| || | |||||||| | || || |||||| Sbjct 24706 GGTGAAAAGGACTTTGAAGTTAAGGAGGGAGATAGAGTCGCACAATTGGTGCTCGAGAGG 24765 Query 163721 TGTGAGACACCCGATGTGGAGGAAATTGGTCTCCTTGAAG-AGACGGAGAGGGGTGCGGG 163779 | | || ||||| ||| |||| | || ||||| || ||| | ||||| | ||| Sbjct 24766 ATTTATACGCCCGAGGTGAAGGAGGT-GGAGGCCTTGGAGGAGAGTGTTAGGGGAGAGGG 24824 Query 163780 TGGTTTTGGGTCTACTGG 163797 |||||||||| |||||| Sbjct 24825 TGGTTTTGGGAGTACTGG 24842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620716243467120