Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 224 1e-53
seq481 123 3e-23
seq274 89.7 6e-13
>seq2637
Length=17558
Score = 224 bits (248), Expect = 1e-53
Identities = 1174/1825 (64%), Gaps = 73/1825 (4%)
Strand=Plus/Minus
Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTC-TTGAT 111604
|||||||| |||||||||| ||| | || |||| | || ||||| ||| |
Sbjct 8921 TATTTTGGATTCAAGACCCTTGAGCGATCATATCTCCTCCGTCTCGATGGCAAGATTGCT 8862
Query 111605 GGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGA 111664
| | ||| || | ||| | ||||| || ||| | || ||||| || || ||||| ||
Sbjct 8861 G-AGCGCCCTCAACATATGATTATGCGCGTGGCGGTTGGCATCCACGGTGAGGATATCGA 8803
Query 111665 TTCTGTTTTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAA 111723
||| | | ||||||||| || |||||| | ||| |||| || ||| |||| |
Sbjct 8802 GGCTGCTATTGAGACATACAACTTGATGTCAAGCAAGTAC-TTCACTCATGCATCACCCA 8744
Query 111724 CCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACA 111783
| ||||| ||||||||| ||| | || | || || |||||| | | | |
Sbjct 8743 CACTCTTTGCCGCTGGTACGCCACAGGCTCAGCTTTCTTCATGCTTCCTTGTCGACATGA 8684
Query 111784 AGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGT 111843
|||| ||| || | ||||| |||| ||| |||| | |||||| || || |||
Sbjct 8683 AGGAAGATAGCATTGACGGCATCTACGACACCCTCAAGGCCTGTGCCATGATTTCCAAGA 8624
Query 111844 GGGCTGGTGGTATCGGGATGCACATCCAT-GATGTCAGAGCCAACAAGTCTCGTATTAGA 111902
|| || ||||| || | ||||||| || || | |||| | || | | |
Sbjct 8623 ATGCGGGAGGTATTGGTCTAAACATCCACAGAATTC-GTGCCA-CTGGTGCCTACATCGC 8566
Query 111903 -GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 111961
||||| || || | || | || ||| |||| ||| | || || || ||| ||| ||
Sbjct 8565 TGGTACCAACGGAAACTCCAACGGAATTGTTCCCATGTTGCGAGTCTTCAACAACACTGC 8506
Query 111962 GCGCTATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGA 112015
| ||||| |||| | ||| ||| | || | | || |||| |||| || ||
Sbjct 8505 TAGATATGTTGACCAGGGTGGCAACAAGCGCC-CAGGTG--CTTTCGCTATCTACCTCGA 8449
Query 112016 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGA 112075
|||||||||||| ||| | | |||| |||||| |||| ||||| || | |||||
Sbjct 8448 GCCATGGCACGCCGATGTTTTCGAGTACCTTGACCTGCGAAAGAACCACGGCAAGGAGGA 8389
Query 112076 GGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 112134
| || ||| ||||||||||||| || | |||||||| ||||| ||||||||| | |
Sbjct 8388 AGTTCG-TGCTCGCGATCTCTTCTATGCCTTGTGGATTCCCGATCTATTCATGAAGCGTG 8330
Query 112135 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATG 112194
| ||| ||| | | | ||| |||| | || || | || || || | | ||||
Sbjct 8329 TCGAGAAGAACGCCGAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGCTTGGCTGATG 8270
Query 112195 CCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTG 112254
| ||||| ||||| || || || ||| |||||||| |||| | | | | | | |
Sbjct 8269 TCTACGGTGATGAGTTCGAGGCTCTGTACGAGAAGTACGA-GAAGGAGGGCAAGGGTC-G 8212
Query 112255 C--GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGG 112312
| ||| | ||| | | ||| | | || ||| || ||||||||||||| ||
Sbjct 8211 CAAGACTATCAAGGCTCAAAAGCTTTGGTACTCCATCCTCGAGGCTCAAACCGAGACCGG 8152
Query 112313 TACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGG 112372
| |||| ||||| ||||| || || || |||| |||||| || || ||||| | ||
Sbjct 8151 AAACCCATTCATGCTCTACAAGGATGCATGCAACCGAAAGAGCAACCAGAAGAACCTTGG 8092
Query 112373 TGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 112432
| ||| || || ||| | || || ||||| |||| | | ||| ||||
Sbjct 8091 TACTATCCGAAGCTCTAACTTGTGCACTGAAATTGTGGAGTACTCTTCGCCAGACGAGAT 8032
Query 112433 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-- 112490
||||| || ||| | || || | || ||||| | ||||| || || |||| |
Sbjct 8031 TGCTGTCTGCAACTTGGCCTCCCTTGCGCTCCCGACTTATGTTGA--CATGAACAACGGC 7974
Query 112491 ACATTTGATTATGAAAAACTCCACGAAGT-TACGAAAAC--TGTCACAAAAAACCTAAAC 112547
|||| || | || || |||||||| || | | || | |||| || ||| |||||
Sbjct 7973 ACATACGACTTTGCCAAGCTCCACGAGGTCTGCCAAGTCGTTGTC---AAGAACTTAAAC 7917
Query 112548 AGAGTTATTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGA 112604
| | | || |||| || | ||||| ||| ||| | || || | || | |
Sbjct 7916 AAAATCATCGATATCAACTACTACCCAGTTCCCGAGGCGAGACG--AAGC-AACTTTCGT 7860
Query 112605 CACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT---TCTTTGTCGC 112661
||||| || |||| | ||||| |||||||| || |||| ||| | || |||
Sbjct 7859 CACCGACCCATTGCCGTTGGTGTTCAAGGTCTTGCAGATGCTTTCTTGGCACTCCGTCTT 7800
Query 112662 CACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTAT 112721
| |||| || || || || ||| | |||| | || || ||||| || ||
Sbjct 7799 C---CATTCGACTCACCTGAGGCCAAGCACCTCAACATCCAAATCTTCGAGACCATCTAC 7743
Query 112722 CACGCCGCTCTTGAGGCGAGTTCG---GAGTTGGCAGAGGTTGATGGTCCATATGAAACC 112778
||||| ||| |||| | |||| ||| | || || | |||||||| ||||| ||
Sbjct 7742 CACGCTGCT-TTGA--CCGCTTCGATTGAGCTTGCCAAGATCGATGGTCCTTATGAGACA 7686
Query 112779 TTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGA--TATGTGGGAAGGTGAGA 112836
| |||||| ||||| || || | || | |||||||| ||| |||| || | | |
Sbjct 7685 TATGAGGGCTCTCCGGCATCGAAGGGTGAGCTTCAATATGACCTATGGGGCA---TCACC 7629
Query 112837 CCAAGC-TTCACTACGACTGGGA-CGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 112894
|| | | || || |||||||| ||| | ||| ||| |||||| | | ||| | ||
Sbjct 7628 CCCACCGATCTCTGGGACTGGGATAGCT-TGAAGCAACAGATCAAGCAACATGGTATCCG 7570
Query 112895 TAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACA-AATCTTGGGTAATA 112953
|||||| | | | || || |||||||| ||| |||| || | |||||| | |
Sbjct 7569 CAACAGTTTGCTTGTCGCTCCTATGCCAACTGCCAGCACCAGTCAGATTCTTGGCT-TCA 7511
Query 112954 ATGAATGCTTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAG 113012
| || |||||||| || ||||| | ||||| || ||| | | || || || |||
Sbjct 7510 ACGAGTGCTTTGAGCCATACACTTCCAACATTTACTCT-CGCCGTGTGCTTGCTGGCGAG 7452
Query 113013 TTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAG 113072
|| | | |||||| | || | ||| | ||| || || |||||||| |
Sbjct 7451 TTCCAGGTCGTCAACCCTTGGTTGTTGAAGGACTTGGTAGATATGGGCCTCTGGTCTGAC 7392
Query 113073 GATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCA 113132
| |||||| | | ||| | | || |||||||| || || ||| | || |||
Sbjct 7391 AACATGAAGAACCGCATCATCGCTGATGGGGGTTCCATCCAGAACATTCCAAACATCCCA 7332
Query 113133 GATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGA--TGTCATTG 113190
| ||| || || ||||| || |||||||| ||| | || || | | ||
Sbjct 7331 GCTGATATCAAAGCTCTGTACAAGACCGTTTGGGAGATC--TCTCAACGAACTATTGTTC 7274
Query 113191 ACATGGCCGCAGATCGTGGTCGC-TTCATTGATCAAAGTCAAAGT--ATGAATCTATTCA 113247
| ||||| || || ||||| ||| | ||| |||||| || ||| ||||| | ||
Sbjct 7273 AGATGGCAGCCGACCGTGG-CGCATACATCGATCAA--TCCCAGTCGATGAACATCCACA 7217
Query 113248 TGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTC 113307
|| | |||||| ||| |||| || | |||||| | | |||||| |||
Sbjct 7216 TGAAGGATCCAACCATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGTTGGGAT 7157
Query 113308 TCAAAACGGGGATGTATTACCTCCG 113332
| || || || ||||| ||||||||
Sbjct 7156 TGAAGACTGGCATGTACTACCTCCG 7132
>seq481
Length=22500
Score = 123 bits (136), Expect = 3e-23
Identities = 161/217 (74%), Gaps = 8/217 (4%)
Strand=Plus/Minus
Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AG 102164
|||||||| || || | ||||| || || |||||| | | ||| || | |||| ||
Sbjct 2380 ACAGTTCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATTCAAGACAAGAAG 2321
Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224
|| | |||||||| | || || | ||||| || |||||||||||||||||||||
Sbjct 2320 TC---TACCTTTGCTCAACGTCTTGTTGCATTCGCAGCTGTTGAGGGTATCTTCTTCTCC 2264
Query 102225 GGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283
||||| ||| ||| | || | |||| | |||||||| ||||| ||| | || || ||
Sbjct 2263 GGTTCATTC-GCGTCCATCTTTTGGTTGAAGAAGCGTGGTCTGATGGCCGGGCTTACTTT 2205
Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320
|||||| ||||| ||||| ||||| ||||| || |||
Sbjct 2204 CTCCAATGAGCTCATCTCCCGTGATGAGGGTCTTCAC 2168
>seq274
Length=77263
Score = 89.7 bits (98), Expect = 6e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 163601 GGTGCGGGTGTTATTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTCTTCAATCAT 163660
||||| || || ||||| | || || || | ||||| ||| | || ||||||||
Sbjct 24646 GGTGCTGGAGTCATTGACGCTGATTATCGCGGCCAGGTCAAGGTCCTGCTTTTCAATCAC 24705
Query 163661 GGAGACAAAGACTTTGAGGTAAAGAGGGGGGAGCGCATCGCACAACTTGTTCTTGAGAGG 163720
|| || || |||||||| || ||| ||| || | |||||||| | || || ||||||
Sbjct 24706 GGTGAAAAGGACTTTGAAGTTAAGGAGGGAGATAGAGTCGCACAATTGGTGCTCGAGAGG 24765
Query 163721 TGTGAGACACCCGATGTGGAGGAAATTGGTCTCCTTGAAG-AGACGGAGAGGGGTGCGGG 163779
| | || ||||| ||| |||| | || ||||| || ||| | ||||| | |||
Sbjct 24766 ATTTATACGCCCGAGGTGAAGGAGGT-GGAGGCCTTGGAGGAGAGTGTTAGGGGAGAGGG 24824
Query 163780 TGGTTTTGGGTCTACTGG 163797
|||||||||| ||||||
Sbjct 24825 TGGTTTTGGGAGTACTGG 24842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620716243467120
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