Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 219 5e-52
seq1553 102 1e-16
seq481 93.3 5e-14
>seq2637
Length=17558
Score = 219 bits (242), Expect = 5e-52
Identities = 635/964 (66%), Gaps = 25/964 (3%)
Strand=Plus/Plus
Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG--G 110329
||||| | ||||| |||| || || | ||||| |||| | |||||||| | || |
Sbjct 7990 ACATAAGTCGGGAGCGCAAGGGAGGCCAAGTTGCAGACAGCAATCTCGTCT--GGCGAAG 8047
Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGAT 110389
||| |||| |||||| || |||||||| || || || ||| | ||||||||| |
Sbjct 8048 AGTACTCCACAATTTCAGTGCACAAGTTAGAGCTTCGGATAGTACCAAGGTTCTTCTGGT 8107
Query 110390 T-CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGT 110448
| | ||| | ||||||||||||||| ||||||||| ||||| | || || || || ||
Sbjct 8108 TGCTCTTTCG-GTTGCATGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCGGTTTGA 8166
Query 110449 GACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAG--TTGCGTTAGCGAGACCTT 110506
| || ||| |||| | ||| | | || || || ||||| | | || |
Sbjct 8167 GCCTCGAGGATGGAGTACCAAAGCTTTTGAGCCTTGATAGTCTTGCG--ACCCTTGCCCT 8224
Query 110507 CCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCT 110566
||| ||||||||| ||||| |||| || || | ||||| ||||||| | | ||
Sbjct 8225 CCTTCTCGTACTTCTCGTACAGAGCCTCGAACTCATCACCGTAGACATCAGCCA-AGCCA 8283
Query 110567 TCGC-CTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAAC 110625
|| || | ||| || | || | ||| | | || ||| || | |||||||||
Sbjct 8284 GGGCACTCATTGGGGCACATAAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAAT 8343
Query 110626 AGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGG 110685
|| || |||||||||| || |||| || || || |||| | || || | || |||
Sbjct 8344 AGATCGGGAATCCACAAGGCATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGTGG 8403
Query 110686 TTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCG 110745
|| || || || | | || | | ||| | ||||||||| ||||| |||| ||||
Sbjct 8404 TTCTTTCGCAGGTCAAGGTACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCG 8463
Query 110746 ATGGATCC------CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAG 110799
| | || ||| | | || |||||| |||||| | || ||| ||||||
Sbjct 8464 AAAGCACCTGGGCGCTT--GTTG-CCACCCTGGTCAACATATCTAGCAGTGTTGTTGAAG 8520
Query 110800 ACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTA 110859
|| | | ||| |||| |||||| | ||| | || || ||||| || || |
Sbjct 8521 ACTCGCAACATGGGAACAATTCCGTTGGAGTTTCCGTTGGTACCAGCGATGTAGGCACCA 8580
Query 110860 TTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCA 110919
|||||||||| |||||| | | ||||||||| ||||| ||| ||| |||
Sbjct 8581 GTGGCACGAATTCTGTGGATGTTTAGACCAATACCTCCCGCATTCTTGGAAATCATGGCA 8640
Query 110920 CACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAG 110979
|| | |||| || | || || || ||||| |||| |||| || | | || |||
Sbjct 8641 CAGGCCTTGAGGGTGTCGTAGATGCCGTCAATGCTATCTTCCTTCATGTCGACAAGGAAG 8700
Query 110980 CAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATG 111039
|| ||||| | ||||| | ||||| || || |||||||| |||| |||||| ||
Sbjct 8701 CATGAAGAAAGCTGAGCCTGTGGCGTACCAGCGGCAAAGAGTGTGGGTGATGCATGAGTG 8760
Query 111040 AACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGT 111097
| || |||| |||||| ||||||||| || | || | | ||| | |||||
Sbjct 8761 A--AGTACTTGCTTGACATCAAGTTGTATGTCTCAATAGCAGCCTCGATATCCTCACCGT 8818
Query 111098 GAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAA 111157
| || |||| || || ||||| | ||||| |||||| || | ||| ||||| |
Sbjct 8819 GGATGCCAACCGCCACGCGCATAATCATATGTTGAGGGCGCTCAGCAATCTTGCCATCGA 8878
Query 111158 CACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCAC 111217
||| | || || ||| |||||||||| ||||| ||| | | ||| ||||
Sbjct 8879 GACGGAGGAGATATGATCGCTCAAGGGTCTTGAATCCAAAATATTGGTAGTTGAAGTCAC 8938
Query 111218 GATC 111221
||||
Sbjct 8939 GATC 8942
Score = 82.4 bits (90), Expect = 9e-11
Identities = 234/356 (66%), Gaps = 4/356 (1%)
Strand=Plus/Plus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559
|||||||||||| || ||||||||| || ||||| || || ||||| | | |||
Sbjct 7224 GTTCATCGACTGGGATTGATCGATGTATGCGCCACGGTCGGCTGCCATCTGAACAATAGT 7283
Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619
||| || ||||| || |||||||||| | ||||||||| | || ||||
Sbjct 7284 TCGTTGAGAGATCTCCCAAACGGTCTTGTACAGAGCTTTGATATCAGCTGGGATGTTTGG 7343
Query 109620 GATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAG 109679
||||| || || || || ||| | | ||| | | |||||| | | ||||||||
Sbjct 7344 AATGTTCTGGATGGAACCCCCATCAGCGATGATGCGGTTCTTCATGTTGTCAGACCAGAG 7403
Query 109680 ACCGACCT-TTTTGAGATCGTCAACAA-GATGCTTGTTGACCACGACAAATTCACCAGCA 109737
|| | | | || | ||||||| | | |||||| || || || ||||||
Sbjct 7404 GCCCATATCTACCAAGTCCTTCAACAACCAAG--GGTTGACGACCTGGAACTCGCCAGCA 7461
Query 109738 AGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGG 109797
|| || || ||| ||||| | ||||| || || || ||||| ||| ||| ||
Sbjct 7462 AGCACACGGCGAGAGTAAATGTTGGAAGTGTATGGCTCAAAGCACTCGTTGAAGCCAAGA 7521
Query 109798 ATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853
|| || ||| || || ||||| ||||| | || | |||||| |||| |||
Sbjct 7522 ATCTGACTGGTGCTGGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGATACC 7577
>seq1553
Length=189915
Score = 102 bits (112), Expect = 1e-16
Identities = 221/326 (68%), Gaps = 6/326 (2%)
Strand=Plus/Plus
Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733
|| |||| |||||| || ||||||||||| | ||||| || | | | |||
Sbjct 20993 TTGCCGATAGCGTCGATTTCATCGATGAAAATTATACATGGCGTGCTCTTCCTCGCCATG 21052
Query 11734 TCGAAAAGTTCACGTACACGCTTC--GCTCCAACACCTACGAACATCTCAACGAAGTTTG 11791
||||||| || || ||| ||| || || ||||| ||||||||||| ||||| | |
Sbjct 21053 GCGAAAAGATCTCG--CACTCTTGATGCACCGACACCAACGAACATCTCCACGAACTCGG 21110
Query 11792 CGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGA 11850
|| |||||||| ||| || || | ||||| ||||| | || || | ||||
Sbjct 21111 AACCACTGACACTGAA-GAAAGGTACTTGCGACTCGCCAGCAGTTGCCTTTGCTAAGAGA 21169
Query 11851 GTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTT 11910
|||||||| ||||| |||| ||||| || | || || ||||| |||||||||||
Sbjct 21170 GTCTTACCTGTACCTGGTGGACCAGAAAGGATAGCTCCTCGGGGAATCTTGGCACCTAAC 21229
Query 11911 CCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCG 11970
| | | ||| || | || || || | |||| |||| || |||| |||||||
Sbjct 21230 CGCTGGAACTTCTCGGGAGTTTTCAGAAATTGGACAAACTCCATAATTTCCGCCTTGGCT 21289
Query 11971 GAGTCGATACCCTCAACATCGGTGAA 11996
||| ||||| | ||||| | |||
Sbjct 21290 TCGTCCATACCAGCCACATCTGCGAA 21315
>seq481
Length=22500
Score = 93.3 bits (102), Expect = 5e-14
Identities = 155/216 (72%), Gaps = 11/216 (5%)
Strand=Plus/Plus
Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567
||||| || ||||| || |||||||||||||| ||| ||| || | ||| || ||
Sbjct 2169 TGAAGACCCTCATCACGGGAGATGAGCTCATTGGAGAAAGTAAGCCCGGCCATCAGACCA 2228
Query 119568 CTTTTCTTTAGCCAAAAGATGG-CACAAA--AACTTCCAGAAAAGAAGATGCCCTCCACA 119624
| ||||| | ||||||||||| | | || || || || |||||||| ||||| |||
Sbjct 2229 CGCTTCTTCAACCAAAAGATGGACGCGAATGAA---CCGGAGAAGAAGATACCCTCAACA 2285
Query 119625 CAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGA-GACTTGTC--GAA-CCACTTGAG 119680
||||| || | ||||| | ||| |||||| || |||||| ||| ||| |||
Sbjct 2286 GCTGCGAATGCAACAAGACGTTGAGC-AAAGGTAGACTTCTTGTCTTGAATCCATCTGAC 2344
Query 119681 AGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGT 119716
|||||||| |||||| || ||||| || || ||
Sbjct 2345 AGCCCAGTCGGCCTTCTTCTTGATGCAAGGAACTGT 2380
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588951182023800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |