Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2637 219 5e-52 seq1553 102 1e-16 seq481 93.3 5e-14 >seq2637 Length=17558 Score = 219 bits (242), Expect = 5e-52 Identities = 635/964 (66%), Gaps = 25/964 (3%) Strand=Plus/Plus Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG--G 110329 ||||| | ||||| |||| || || | ||||| |||| | |||||||| | || | Sbjct 7990 ACATAAGTCGGGAGCGCAAGGGAGGCCAAGTTGCAGACAGCAATCTCGTCT--GGCGAAG 8047 Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGAT 110389 ||| |||| |||||| || |||||||| || || || ||| | ||||||||| | Sbjct 8048 AGTACTCCACAATTTCAGTGCACAAGTTAGAGCTTCGGATAGTACCAAGGTTCTTCTGGT 8107 Query 110390 T-CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGT 110448 | | ||| | ||||||||||||||| ||||||||| ||||| | || || || || || Sbjct 8108 TGCTCTTTCG-GTTGCATGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCGGTTTGA 8166 Query 110449 GACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAG--TTGCGTTAGCGAGACCTT 110506 | || ||| |||| | ||| | | || || || ||||| | | || | Sbjct 8167 GCCTCGAGGATGGAGTACCAAAGCTTTTGAGCCTTGATAGTCTTGCG--ACCCTTGCCCT 8224 Query 110507 CCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCT 110566 ||| ||||||||| ||||| |||| || || | ||||| ||||||| | | || Sbjct 8225 CCTTCTCGTACTTCTCGTACAGAGCCTCGAACTCATCACCGTAGACATCAGCCA-AGCCA 8283 Query 110567 TCGC-CTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAAC 110625 || || | ||| || | || | ||| | | || ||| || | ||||||||| Sbjct 8284 GGGCACTCATTGGGGCACATAAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAAT 8343 Query 110626 AGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGG 110685 || || |||||||||| || |||| || || || |||| | || || | || ||| Sbjct 8344 AGATCGGGAATCCACAAGGCATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGTGG 8403 Query 110686 TTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCG 110745 || || || || | | || | | ||| | ||||||||| ||||| |||| |||| Sbjct 8404 TTCTTTCGCAGGTCAAGGTACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCG 8463 Query 110746 ATGGATCC------CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAG 110799 | | || ||| | | || |||||| |||||| | || ||| |||||| Sbjct 8464 AAAGCACCTGGGCGCTT--GTTG-CCACCCTGGTCAACATATCTAGCAGTGTTGTTGAAG 8520 Query 110800 ACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTA 110859 || | | ||| |||| |||||| | ||| | || || ||||| || || | Sbjct 8521 ACTCGCAACATGGGAACAATTCCGTTGGAGTTTCCGTTGGTACCAGCGATGTAGGCACCA 8580 Query 110860 TTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCA 110919 |||||||||| |||||| | | ||||||||| ||||| ||| ||| ||| Sbjct 8581 GTGGCACGAATTCTGTGGATGTTTAGACCAATACCTCCCGCATTCTTGGAAATCATGGCA 8640 Query 110920 CACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAG 110979 || | |||| || | || || || ||||| |||| |||| || | | || ||| Sbjct 8641 CAGGCCTTGAGGGTGTCGTAGATGCCGTCAATGCTATCTTCCTTCATGTCGACAAGGAAG 8700 Query 110980 CAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATG 111039 || ||||| | ||||| | ||||| || || |||||||| |||| |||||| || Sbjct 8701 CATGAAGAAAGCTGAGCCTGTGGCGTACCAGCGGCAAAGAGTGTGGGTGATGCATGAGTG 8760 Query 111040 AACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGT 111097 | || |||| |||||| ||||||||| || | || | | ||| | ||||| Sbjct 8761 A--AGTACTTGCTTGACATCAAGTTGTATGTCTCAATAGCAGCCTCGATATCCTCACCGT 8818 Query 111098 GAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAA 111157 | || |||| || || ||||| | ||||| |||||| || | ||| ||||| | Sbjct 8819 GGATGCCAACCGCCACGCGCATAATCATATGTTGAGGGCGCTCAGCAATCTTGCCATCGA 8878 Query 111158 CACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCAC 111217 ||| | || || ||| |||||||||| ||||| ||| | | ||| |||| Sbjct 8879 GACGGAGGAGATATGATCGCTCAAGGGTCTTGAATCCAAAATATTGGTAGTTGAAGTCAC 8938 Query 111218 GATC 111221 |||| Sbjct 8939 GATC 8942 Score = 82.4 bits (90), Expect = 9e-11 Identities = 234/356 (66%), Gaps = 4/356 (1%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 |||||||||||| || ||||||||| || ||||| || || ||||| | | ||| Sbjct 7224 GTTCATCGACTGGGATTGATCGATGTATGCGCCACGGTCGGCTGCCATCTGAACAATAGT 7283 Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619 ||| || ||||| || |||||||||| | ||||||||| | || |||| Sbjct 7284 TCGTTGAGAGATCTCCCAAACGGTCTTGTACAGAGCTTTGATATCAGCTGGGATGTTTGG 7343 Query 109620 GATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAG 109679 ||||| || || || || ||| | | ||| | | |||||| | | |||||||| Sbjct 7344 AATGTTCTGGATGGAACCCCCATCAGCGATGATGCGGTTCTTCATGTTGTCAGACCAGAG 7403 Query 109680 ACCGACCT-TTTTGAGATCGTCAACAA-GATGCTTGTTGACCACGACAAATTCACCAGCA 109737 || | | | || | ||||||| | | |||||| || || || |||||| Sbjct 7404 GCCCATATCTACCAAGTCCTTCAACAACCAAG--GGTTGACGACCTGGAACTCGCCAGCA 7461 Query 109738 AGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGG 109797 || || || ||| ||||| | ||||| || || || ||||| ||| ||| || Sbjct 7462 AGCACACGGCGAGAGTAAATGTTGGAAGTGTATGGCTCAAAGCACTCGTTGAAGCCAAGA 7521 Query 109798 ATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 || || ||| || || ||||| ||||| | || | |||||| |||| ||| Sbjct 7522 ATCTGACTGGTGCTGGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGATACC 7577 >seq1553 Length=189915 Score = 102 bits (112), Expect = 1e-16 Identities = 221/326 (68%), Gaps = 6/326 (2%) Strand=Plus/Plus Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 || |||| |||||| || ||||||||||| | ||||| || | | | ||| Sbjct 20993 TTGCCGATAGCGTCGATTTCATCGATGAAAATTATACATGGCGTGCTCTTCCTCGCCATG 21052 Query 11734 TCGAAAAGTTCACGTACACGCTTC--GCTCCAACACCTACGAACATCTCAACGAAGTTTG 11791 ||||||| || || ||| ||| || || ||||| ||||||||||| ||||| | | Sbjct 21053 GCGAAAAGATCTCG--CACTCTTGATGCACCGACACCAACGAACATCTCCACGAACTCGG 21110 Query 11792 CGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGA 11850 || |||||||| ||| || || | ||||| ||||| | || || | |||| Sbjct 21111 AACCACTGACACTGAA-GAAAGGTACTTGCGACTCGCCAGCAGTTGCCTTTGCTAAGAGA 21169 Query 11851 GTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTT 11910 |||||||| ||||| |||| ||||| || | || || ||||| ||||||||||| Sbjct 21170 GTCTTACCTGTACCTGGTGGACCAGAAAGGATAGCTCCTCGGGGAATCTTGGCACCTAAC 21229 Query 11911 CCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCG 11970 | | | ||| || | || || || | |||| |||| || |||| ||||||| Sbjct 21230 CGCTGGAACTTCTCGGGAGTTTTCAGAAATTGGACAAACTCCATAATTTCCGCCTTGGCT 21289 Query 11971 GAGTCGATACCCTCAACATCGGTGAA 11996 ||| ||||| | ||||| | ||| Sbjct 21290 TCGTCCATACCAGCCACATCTGCGAA 21315 >seq481 Length=22500 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/216 (72%), Gaps = 11/216 (5%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| || ||||| || |||||||||||||| ||| ||| || | ||| || || Sbjct 2169 TGAAGACCCTCATCACGGGAGATGAGCTCATTGGAGAAAGTAAGCCCGGCCATCAGACCA 2228 Query 119568 CTTTTCTTTAGCCAAAAGATGG-CACAAA--AACTTCCAGAAAAGAAGATGCCCTCCACA 119624 | ||||| | ||||||||||| | | || || || || |||||||| ||||| ||| Sbjct 2229 CGCTTCTTCAACCAAAAGATGGACGCGAATGAA---CCGGAGAAGAAGATACCCTCAACA 2285 Query 119625 CAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGA-GACTTGTC--GAA-CCACTTGAG 119680 ||||| || | ||||| | ||| |||||| || |||||| ||| ||| ||| Sbjct 2286 GCTGCGAATGCAACAAGACGTTGAGC-AAAGGTAGACTTCTTGTCTTGAATCCATCTGAC 2344 Query 119681 AGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGT 119716 |||||||| |||||| || ||||| || || || Sbjct 2345 AGCCCAGTCGGCCTTCTTCTTGATGCAAGGAACTGT 2380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588951182023800