Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2637 228 1e-54 seq481 129 7e-25 >seq2637 Length=17558 Score = 228 bits (252), Expect = 1e-54 Identities = 955/1476 (65%), Gaps = 65/1476 (4%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATT-TGTGCGGTGGA 105993 || ||||| | ||||| || |||||||| || || | |||||| | || |||| Sbjct 7477 TAAATGTTGGAAGTGTATGGCTCAAAGCACTCGTTGA-AGCCAAGAATCTGACTGGTGCT 7535 Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC 106053 ||| |||||||| || || | | | |||||| || | ||| | || |||||| ||| Sbjct 7536 GGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGATACCATGTTGCTTGATCTGTTG 7595 Query 106054 CTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATA--TCAAATT 106109 ||| | ||||||||| || || | | || | | | || |||| ||| ||| Sbjct 7596 CTTCAAGCTATCCCAGTCCCAGA-GATCGGTGGGGGTGA---TGCCCCATAGGTCATATT 7651 Query 106110 GAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGG-CTTC- 106167 ||||| | || | || | ||||| |||||| |||||||||| | ||| | | ||| Sbjct 7652 GAAGCTCACCCTTCGATGCCGGAGAGCCCTCATATGTCTCATAAGGACCATCGATCTTGG 7711 Query 106168 --AGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA 106225 ||| | || ||| || | | | ||||| || ||||| || ||||| | Sbjct 7712 CAAGCTCAATCGAAGCGG---TCAAAGCA-GCGTGGTAGATGGTCTCGAAGATTTGGATG 7767 Query 106226 TTCATCTCCTTGGCTTCATCTGAATCAAATG-----CGTAGCGGCACAAAATAAATACAT 106280 || | | |||||| ||| ||| || |||| || || | || ||| ||| Sbjct 7768 TTGAGGTGCTTGGCCTCAGGTGAGTCGAATGGAAGACGGAGTGCCAAGAAAG-----CAT 7822 Query 106281 CCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTT--TCGCGC 106338 | || |||||||||||||| | |||| |||| ||| || | || ||| || ||| Sbjct 7823 CTGCAAGACCTTGAACACCAACGGCAATGGGTCGGTGACGAAAGTTG--CTTCGTCTCGC 7880 Query 106339 AGTCTC---AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAAT 106395 ||| ||| || || | || | || |||| | ||||| || ||| ||| | Sbjct 7881 ---CTCGGGAACTGGGTAGTAGTTGATATCGATGATTTTGTTTAAGTTCTTGACAACGA- 7936 Query 106396 CTTTGT-GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG--ACATA 106452 ||| | || || || || || || | || | |||| || | ||||| ||||| Sbjct 7937 CTTGGCAGACCTCGTGGAGCTTGGCAAAGTCGTATGTGCC-GT-TGTTCATGTCAACATA 7994 Query 106453 CTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTC 106512 | || || || | || ||||| ||||| ||||| |||| || | |||||| Sbjct 7995 AGTCGGGAGCGCAAGGGAGGCCAAGTTGCAGACAGCAATCTCGTCTGGCGAAGAGTACTC 8054 Query 106513 TAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 106572 | |||||| || |||||||| || || || || || | ||||| ||||| ||||| Sbjct 8055 CACAATTTCAGTGCACAAGTTAGAGCTTCGGATAGTACCAAGGTTCTTCTGGTTGCTCTT 8114 Query 106573 TTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAG 106632 | |||||| |||||||||||||||||| | || | || ||||| || || | || ||| Sbjct 8115 TCGGTTGCATGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAG 8174 Query 106633 AATTGCCTTCCACA-CATCGGCGGCTGG-TACAATGGCGTTGGCCCGT-CCCTCCGCCTC 106689 || | | ||| | | | | | || | || | ||| ||| | |||||| ||| Sbjct 8175 GATGGAGTACCAAAGCTTTTGAGCCTTGATAGTCTTGCGA---CCCTTGCCCTCCTTCTC 8231 Query 106690 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 106749 |||||| ||| || || || ||||| ||||| | || | | || || || Sbjct 8232 GTACTTCTCGTACAGAGCCTCGAACTCATCACCGTAGACATCAGCCAAGCCAGGGCACTC 8291 Query 106750 GTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGG 106809 | || || | ||||| ||| | | || ||| || ||||||||||| || || || Sbjct 8292 ATTGGGGCACATAAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAATAGATCGGG 8351 Query 106810 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 106869 |||||||| || | |||||||| | | ||| | || || | || ||||| ||| Sbjct 8352 AATCCACAAGGCATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGTGGTTCTTTCG 8411 Query 106870 TAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC 106929 | |||||| |||| | | ||| |||||||||||||| || |||| |||| || || Sbjct 8412 CAGGTCAAGGTACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCGAAAGCACC 8471 Query 106930 CTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 106983 | | ||| ||| | || | ||||| | || ||| ||| || || || | Sbjct 8472 ---TGGGCGCTTGTTGCCACCCTGGTCAACATATCTAGCAGTGTTGTTGAAGACTCGCAA 8528 Query 106984 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT 107043 ||| |||| ||| || | || | || || || || || | | |||| | Sbjct 8529 CATGGGAACAATTCCGTTGGAGTTTCCGTTGGTACCAGCGATGTAGGCACCAGTGGCACG 8588 Query 107044 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 107103 | ||||||| | |||||||| || || ||| || || ||||| || | Sbjct 8589 AATTCTGTGGATGTTTAGACCAATACCTCCCGCATTCTTGGAAATCATGGCACAGGCCTT 8648 Query 107104 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA 107163 || || | ||||| |||| || || ||||| || ||| ||||||||| || Sbjct 8649 GAGGGTGTCGTAGATGCCGTCAATGCTATCTTCCTTCATGTCGACAAGGAAGCATGAAGA 8708 Query 107164 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 107223 | ||| | ||| |||||||| ||||| || |||| ||| ||| |||| ||| Sbjct 8709 AAGCTGAGCCTGTGGCGTACCAGCGGCAAAGAGTGTGGGTGATGCATGAGTGAAG-TAC- 8766 Query 107224 TTGG--GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 107281 ||| |||||| || ||||||||| | ||| || || || || ||||||||||| Sbjct 8767 TTGCTTGACATCAAGTTGTATGTCTCAATAGCAGCCTCGATATCCTCACCGTGGATGCCA 8826 Query 107282 ATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA 107341 | ||||| ||||||| ||| | ||| || || | |||||||||| || | Sbjct 8827 ACCGCCACGCGCATAATCATATGTTGAGGGCGCTCAGCAATCTTGCCATCGAGACGGAGG 8886 Query 107342 AGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 ||||| | || ||||||||| |||| ||||| || Sbjct 8887 AGATATGATC-GCTCAAGGGTCTTGAATCCAAAATA 8921 >seq481 Length=22500 Score = 129 bits (142), Expect = 7e-25 Identities = 161/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| ||||||||||| ||||| || || ||||| ||||| || || | ||| ||||| Sbjct 2168 GTGAAGACCCTCATCACGGGAGATGAGCTCATTGGAGAAAGTAAGCCCGGCCATCAGACC 2227 Query 117345 CCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 117403 ||||||||||||||| | || | ||| |||||| |||||||||||||||||||| ||| Sbjct 2228 ACGCTTCTTCAACCAAAAGATGGACGC-GAATGAACCGGAGAAGAAGATACCCTCAACAG 2286 Query 117404 ACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC---AAACCATTTCA 117460 || || |||| ||| || | || |||| |||||| |||| || |||| | | Sbjct 2287 CTGCGAATGCAACAAGACGTTGAGCAAAGG---TAGACTTCTTGTCTTGAATCCATCTGA 2343 Query 117461 TTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGT 117497 ||||| | |||||||||| || || || || || Sbjct 2344 CAGCCCAGTCGGCCTTCTTCTTGATGCAAGGAACTGT 2380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589955939684040