Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 228 1e-54
seq481 129 7e-25
>seq2637
Length=17558
Score = 228 bits (252), Expect = 1e-54
Identities = 955/1476 (65%), Gaps = 65/1476 (4%)
Strand=Plus/Plus
Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATT-TGTGCGGTGGA 105993
|| ||||| | ||||| || |||||||| || || | |||||| | || ||||
Sbjct 7477 TAAATGTTGGAAGTGTATGGCTCAAAGCACTCGTTGA-AGCCAAGAATCTGACTGGTGCT 7535
Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC 106053
||| |||||||| || || | | | |||||| || | ||| | || |||||| |||
Sbjct 7536 GGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGATACCATGTTGCTTGATCTGTTG 7595
Query 106054 CTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATA--TCAAATT 106109
||| | ||||||||| || || | | || | | | || |||| ||| |||
Sbjct 7596 CTTCAAGCTATCCCAGTCCCAGA-GATCGGTGGGGGTGA---TGCCCCATAGGTCATATT 7651
Query 106110 GAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGG-CTTC- 106167
||||| | || | || | ||||| |||||| |||||||||| | ||| | | |||
Sbjct 7652 GAAGCTCACCCTTCGATGCCGGAGAGCCCTCATATGTCTCATAAGGACCATCGATCTTGG 7711
Query 106168 --AGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA 106225
||| | || ||| || | | | ||||| || ||||| || ||||| |
Sbjct 7712 CAAGCTCAATCGAAGCGG---TCAAAGCA-GCGTGGTAGATGGTCTCGAAGATTTGGATG 7767
Query 106226 TTCATCTCCTTGGCTTCATCTGAATCAAATG-----CGTAGCGGCACAAAATAAATACAT 106280
|| | | |||||| ||| ||| || |||| || || | || ||| |||
Sbjct 7768 TTGAGGTGCTTGGCCTCAGGTGAGTCGAATGGAAGACGGAGTGCCAAGAAAG-----CAT 7822
Query 106281 CCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTT--TCGCGC 106338
| || |||||||||||||| | |||| |||| ||| || | || ||| || |||
Sbjct 7823 CTGCAAGACCTTGAACACCAACGGCAATGGGTCGGTGACGAAAGTTG--CTTCGTCTCGC 7880
Query 106339 AGTCTC---AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAAT 106395
||| ||| || || | || | || |||| | ||||| || ||| ||| |
Sbjct 7881 ---CTCGGGAACTGGGTAGTAGTTGATATCGATGATTTTGTTTAAGTTCTTGACAACGA- 7936
Query 106396 CTTTGT-GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG--ACATA 106452
||| | || || || || || || | || | |||| || | ||||| |||||
Sbjct 7937 CTTGGCAGACCTCGTGGAGCTTGGCAAAGTCGTATGTGCC-GT-TGTTCATGTCAACATA 7994
Query 106453 CTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTC 106512
| || || || | || ||||| ||||| ||||| |||| || | ||||||
Sbjct 7995 AGTCGGGAGCGCAAGGGAGGCCAAGTTGCAGACAGCAATCTCGTCTGGCGAAGAGTACTC 8054
Query 106513 TAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 106572
| |||||| || |||||||| || || || || || | ||||| ||||| |||||
Sbjct 8055 CACAATTTCAGTGCACAAGTTAGAGCTTCGGATAGTACCAAGGTTCTTCTGGTTGCTCTT 8114
Query 106573 TTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAG 106632
| |||||| |||||||||||||||||| | || | || ||||| || || | || |||
Sbjct 8115 TCGGTTGCATGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCGGTTTGAGCCTCGAG 8174
Query 106633 AATTGCCTTCCACA-CATCGGCGGCTGG-TACAATGGCGTTGGCCCGT-CCCTCCGCCTC 106689
|| | | ||| | | | | | || | || | ||| ||| | |||||| |||
Sbjct 8175 GATGGAGTACCAAAGCTTTTGAGCCTTGATAGTCTTGCGA---CCCTTGCCCTCCTTCTC 8231
Query 106690 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 106749
|||||| ||| || || || ||||| ||||| | || | | || || ||
Sbjct 8232 GTACTTCTCGTACAGAGCCTCGAACTCATCACCGTAGACATCAGCCAAGCCAGGGCACTC 8291
Query 106750 GTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGG 106809
| || || | ||||| ||| | | || ||| || ||||||||||| || || ||
Sbjct 8292 ATTGGGGCACATAAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAATAGATCGGG 8351
Query 106810 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 106869
|||||||| || | |||||||| | | ||| | || || | || ||||| |||
Sbjct 8352 AATCCACAAGGCATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGTGGTTCTTTCG 8411
Query 106870 TAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC 106929
| |||||| |||| | | ||| |||||||||||||| || |||| |||| || ||
Sbjct 8412 CAGGTCAAGGTACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCGAAAGCACC 8471
Query 106930 CTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 106983
| | ||| ||| | || | ||||| | || ||| ||| || || || |
Sbjct 8472 ---TGGGCGCTTGTTGCCACCCTGGTCAACATATCTAGCAGTGTTGTTGAAGACTCGCAA 8528
Query 106984 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT 107043
||| |||| ||| || | || | || || || || || | | |||| |
Sbjct 8529 CATGGGAACAATTCCGTTGGAGTTTCCGTTGGTACCAGCGATGTAGGCACCAGTGGCACG 8588
Query 107044 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 107103
| ||||||| | |||||||| || || ||| || || ||||| || |
Sbjct 8589 AATTCTGTGGATGTTTAGACCAATACCTCCCGCATTCTTGGAAATCATGGCACAGGCCTT 8648
Query 107104 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA 107163
|| || | ||||| |||| || || ||||| || ||| ||||||||| ||
Sbjct 8649 GAGGGTGTCGTAGATGCCGTCAATGCTATCTTCCTTCATGTCGACAAGGAAGCATGAAGA 8708
Query 107164 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 107223
| ||| | ||| |||||||| ||||| || |||| ||| ||| |||| |||
Sbjct 8709 AAGCTGAGCCTGTGGCGTACCAGCGGCAAAGAGTGTGGGTGATGCATGAGTGAAG-TAC- 8766
Query 107224 TTGG--GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 107281
||| |||||| || ||||||||| | ||| || || || || |||||||||||
Sbjct 8767 TTGCTTGACATCAAGTTGTATGTCTCAATAGCAGCCTCGATATCCTCACCGTGGATGCCA 8826
Query 107282 ATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA 107341
| ||||| ||||||| ||| | ||| || || | |||||||||| || |
Sbjct 8827 ACCGCCACGCGCATAATCATATGTTGAGGGCGCTCAGCAATCTTGCCATCGAGACGGAGG 8886
Query 107342 AGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376
||||| | || ||||||||| |||| ||||| ||
Sbjct 8887 AGATATGATC-GCTCAAGGGTCTTGAATCCAAAATA 8921
>seq481
Length=22500
Score = 129 bits (142), Expect = 7e-25
Identities = 161/217 (74%), Gaps = 8/217 (4%)
Strand=Plus/Plus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
||| ||||||||||| ||||| || || ||||| ||||| || || | ||| |||||
Sbjct 2168 GTGAAGACCCTCATCACGGGAGATGAGCTCATTGGAGAAAGTAAGCCCGGCCATCAGACC 2227
Query 117345 CCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 117403
||||||||||||||| | || | ||| |||||| |||||||||||||||||||| |||
Sbjct 2228 ACGCTTCTTCAACCAAAAGATGGACGC-GAATGAACCGGAGAAGAAGATACCCTCAACAG 2286
Query 117404 ACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC---AAACCATTTCA 117460
|| || |||| ||| || | || |||| |||||| |||| || |||| | |
Sbjct 2287 CTGCGAATGCAACAAGACGTTGAGCAAAGG---TAGACTTCTTGTCTTGAATCCATCTGA 2343
Query 117461 TTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGT 117497
||||| | |||||||||| || || || || ||
Sbjct 2344 CAGCCCAGTCGGCCTTCTTCTTGATGCAAGGAACTGT 2380
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589955939684040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |