Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1697 105 8e-18 >seq1697 Length=38374 Score = 105 bits (116), Expect = 8e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 154929 TGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCA 154988 ||||| |||| ||||| | || || || || || | ||||| || || | |||||| Sbjct 31426 TGTAACCTCGTCCATGAGCACGGAGGCCAAGTCTACATGGATGGCGCCAACATGAATGCA 31485 Query 154989 CAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACAT 155048 || | ||||| ||| | ||| |||||| ||||| || ||||| || || || Sbjct 31486 CAAATCGGACTGTGCTCACCCGGAGAGATTGGTGCTGATGTCTGCCATCTCAATTTGCAC 31545 Query 155049 AAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 || ||||||||||| || ||||| |||||||| |||||||| || ||||| ||||| Sbjct 31546 AAGACATTCTGTATCCCTCATGGTGGTGGAGGACCTGGCGTGGGCCCTATTGGTGT 31601 Score = 96.9 bits (106), Expect = 4e-15 Identities = 167/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 |||||||| | || | | ||||| |||||| | || | || ||||| ||||||||| Sbjct 30199 GATATTGCGTTTGGAAATGCTCAAAGATTTGGTGTGCCGTTTGGGTATGGTGGTCCTCAT 30258 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 153866 || || ||||| || || |||||| | ||| ||||||| || || || || | || Sbjct 30259 GCAGCTTTCTTCGCTGTAAGCGACAAGCACAAGCGAAAGATTCCCGGACGACTTATTGGA 30318 Query 153867 CAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAG 153926 |||| ||||| ||| | | ||| ||| | || |||||||| |||| ||| Sbjct 30319 GTGTCAAAGGATAGACTGGGTGACAGGGCAATGAGACTGGCTCTACAGACACGAGAACAG 30378 Query 153927 CATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAAT 153986 || || | |||| || || || ||||| | ||||| || |||||| | |||| || Sbjct 30379 CACATTCGACGAGAGAAGGCTACGAGTAATGTTTGCACTGCGCAGGCATTATTGGCGAAC 30438 Query 153987 ATG 153989 ||| Sbjct 30439 ATG 30441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579188393420640