Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq1697 105 8e-18
>seq1697
Length=38374
Score = 105 bits (116), Expect = 8e-18
Identities = 129/176 (73%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 154929 TGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCA 154988
||||| |||| ||||| | || || || || || | ||||| || || | ||||||
Sbjct 31426 TGTAACCTCGTCCATGAGCACGGAGGCCAAGTCTACATGGATGGCGCCAACATGAATGCA 31485
Query 154989 CAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACAT 155048
|| | ||||| ||| | ||| |||||| ||||| || ||||| || || ||
Sbjct 31486 CAAATCGGACTGTGCTCACCCGGAGAGATTGGTGCTGATGTCTGCCATCTCAATTTGCAC 31545
Query 155049 AAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104
|| ||||||||||| || ||||| |||||||| |||||||| || ||||| |||||
Sbjct 31546 AAGACATTCTGTATCCCTCATGGTGGTGGAGGACCTGGCGTGGGCCCTATTGGTGT 31601
Score = 96.9 bits (106), Expect = 4e-15
Identities = 167/243 (69%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806
|||||||| | || | | ||||| |||||| | || | || ||||| |||||||||
Sbjct 30199 GATATTGCGTTTGGAAATGCTCAAAGATTTGGTGTGCCGTTTGGGTATGGTGGTCCTCAT 30258
Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 153866
|| || ||||| || || |||||| | ||| ||||||| || || || || | ||
Sbjct 30259 GCAGCTTTCTTCGCTGTAAGCGACAAGCACAAGCGAAAGATTCCCGGACGACTTATTGGA 30318
Query 153867 CAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAG 153926
|||| ||||| ||| | | ||| ||| | || |||||||| |||| |||
Sbjct 30319 GTGTCAAAGGATAGACTGGGTGACAGGGCAATGAGACTGGCTCTACAGACACGAGAACAG 30378
Query 153927 CATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAAT 153986
|| || | |||| || || || ||||| | ||||| || |||||| | |||| ||
Sbjct 30379 CACATTCGACGAGAGAAGGCTACGAGTAATGTTTGCACTGCGCAGGCATTATTGGCGAAC 30438
Query 153987 ATG 153989
|||
Sbjct 30439 ATG 30441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579188393420640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |