Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1697 105 8e-18 >seq1697 Length=38374 Score = 105 bits (116), Expect = 8e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 159604 TGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCA 159663 ||||| | || |||||| | || || || || || | ||||| || || | |||||| Sbjct 31426 TGTAACCTCGTCCATGAGCACGGAGGCCAAGTCTACATGGATGGCGCCAACATGAATGCA 31485 Query 159664 CAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACAT 159723 || | || || ||| | || |||||| ||||| || ||||| || || || Sbjct 31486 CAAATCGGACTGTGCTCACCCGGAGAGATTGGTGCTGATGTCTGCCATCTCAATTTGCAC 31545 Query 159724 AAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||||||||||| || ||||| |||||||| |||||||| || ||||||||||| Sbjct 31546 AAGACATTCTGTATCCCTCATGGTGGTGGAGGACCTGGCGTGGGCCCTATTGGTGT 31601 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 ||||| |||||| | || | || || || ||||||||||| || ||||| || || Sbjct 30220 CAAAGATTTGGTGTGCCGTTTGGGTATGGTGGTCCTCATGCAGCTTTCTTCGCTGTAAGC 30279 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGT 158562 |||||| | ||| ||||||| || || || || | || |||| ||||| ||| Sbjct 30280 GACAAGCACAAGCGAAAGATTCCCGGACGACTTATTGGAGTGTCAAAGGATAGACTGGGT 30339 Query 158563 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCA 158622 | | ||| ||| | || |||||||| |||| ||||| || || |||| || || Sbjct 30340 GACAGGGCAATGAGACTGGCTCTACAGACACGAGAACAGCACATTCGACGAGAGAAGGCT 30399 Query 158623 ACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATG 158664 || ||||| | ||||| || || ||| | |||| || ||| Sbjct 30400 ACGAGTAATGTTTGCACTGCGCAGGCATTATTGGCGAACATG 30441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588026420992560