Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq332 158 3e-33 seq2637 95.1 3e-14 >seq332 Length=18159 Score = 158 bits (174), Expect = 3e-33 Identities = 150/190 (79%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||||||||||||||| || ||||| ||||| || | ||||| | || || || Sbjct 2544 AACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCGTCCTC 2603 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || |||||||| || ||||||||||| |||||||| || || ||||| || Sbjct 2604 GAGCTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTGTCCTG 2663 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTC 195108 ||| || |||||| || || ||||||| | | || || ||||||||||| | ||| Sbjct 2664 AATCTTGGACTTGACATTATCGATGGTGTCGCTGGAC--TCGACTTCAAGGGTGATGGTC 2721 Query 195109 TTTCCTGTCA 195118 || || |||| Sbjct 2722 TTGCCAGTCA 2731 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| ||||| ||||| || ||||||||| | || | ||||| || ||||| Sbjct 1811 GTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCTCAACGTACGGCCATCCTCCAGCTG 1870 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||| ||||| || ||||| || || || || || || || ||||| || Sbjct 1871 CTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGGGATTCCCTCCTTATCCTGAATCTT 1930 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||||||||| ||||| |||||||| || ||||| | |||| ||||| || || Sbjct 1931 TGACTTGACGTTGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGTCTTGCCCGT 1990 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || || || | |||||| Sbjct 1991 CAAAGTCTTAACAAAGATTTGCAT 2014 Score = 102 bits (112), Expect = 2e-16 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || ||||| |||||||| || || || || || |||| || || | || || || Sbjct 2261 AACGAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCGTCCTC 2320 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || ||||| || ||||| || | ||||| ||||| ||||||||||| || ||||| || Sbjct 2321 AAGTTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 2380 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTC 195108 ||| || ||| || || || ||||| | | | || || || |||||||| | ||| Sbjct 2381 AATCTTGGACTTAACATTGTCGATGGTATCGCTGGAC--TCAACCTCAAGGGTGATGGTC 2438 Query 195109 TTTCCTGTCAAAGTTTTTACGA 195130 || || || | || || |||| Sbjct 2439 TTGCCGGTGAGGGTCTTGACGA 2460 >seq2637 Length=17558 Score = 95.1 bits (104), Expect = 3e-14 Identities = 190/279 (68%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648 ||||| ||| | |||| | ||||||| ||||||||| | || | | || | || ||| Sbjct 8369 TTCTATGCCTTGTGGATTCCCGATCTATTCATGAAGCGTGTCGAGAAGAACGCCGAGTGG 8310 Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708 | ||| | || |||||||| ||||| | | |||||| || ||| ||||||||| Sbjct 8309 ACTCTTATGTGCCCCAATGAGTGCCCTGGCTTGGCTGATGTCTACGGTGATGAGTTCGAG 8250 Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGG-AAGAGCCAAAAAGGTCGTGAAGGCCCAAGA 160767 |||| || || | ||||| || ||||| ||| | | || | | ||||| ||| | Sbjct 8249 GCTCTGTACGAGAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACTA-TCAAGGCTCAAAA 8191 Query 160768 ACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAA 160827 || ||| | |||||| | || ||| |||| || | || || || ||||| Sbjct 8190 GCTTTGGTACTCCATCCTCGAGGCTCAAACCGAGACCGGAAACCCATTCATGCTCTACAA 8131 Query 160828 GGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGG 160866 |||||| | || ||||| |||||||||||| |||| Sbjct 8130 GGATGCATGCAACCGAAAGAGCAACCAGAAGAACCTTGG 8092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109433680449557