Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq332 158 3e-33
seq2637 95.1 3e-14
>seq332
Length=18159
Score = 158 bits (174), Expect = 3e-33
Identities = 150/190 (79%), Gaps = 4/190 (2%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||||||||||||||||||||| || ||||| ||||| || | ||||| | || || ||
Sbjct 2544 AACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCGTCCTC 2603
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
||||||||| || |||||||| || ||||||||||| |||||||| || || ||||| ||
Sbjct 2604 GAGCTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTGTCCTG 2663
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTC 195108
||| || |||||| || || ||||||| | | || || ||||||||||| | |||
Sbjct 2664 AATCTTGGACTTGACATTATCGATGGTGTCGCTGGAC--TCGACTTCAAGGGTGATGGTC 2721
Query 195109 TTTCCTGTCA 195118
|| || ||||
Sbjct 2722 TTGCCAGTCA 2731
Score = 143 bits (158), Expect = 6e-29
Identities = 154/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| ||||| ||||| ||||| || ||||||||| | || | ||||| || |||||
Sbjct 1811 GTGGAGAGTAGACTCCTTTTGGATGTTGTAATCGCTCAACGTACGGCCATCCTCCAGCTG 1870
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| || ||||| ||||| || ||||| || || || || || || || ||||| ||
Sbjct 1871 CTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGGGATTCCCTCCTTATCCTGAATCTT 1930
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
| ||||||||| ||||| |||||||| || ||||| | |||| ||||| || ||
Sbjct 1931 TGACTTGACGTTGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGTCTTGCCCGT 1990
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
|||||| || || || | ||||||
Sbjct 1991 CAAAGTCTTAACAAAGATTTGCAT 2014
Score = 102 bits (112), Expect = 2e-16
Identities = 145/202 (72%), Gaps = 4/202 (2%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| || ||||| |||||||| || || || || || |||| || || | || || ||
Sbjct 2261 AACGAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCGTCCTC 2320
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| ||||| || ||||| || | ||||| ||||| ||||||||||| || ||||| ||
Sbjct 2321 AAGTTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 2380
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTC 195108
||| || ||| || || || ||||| | | | || || || |||||||| | |||
Sbjct 2381 AATCTTGGACTTAACATTGTCGATGGTATCGCTGGAC--TCAACCTCAAGGGTGATGGTC 2438
Query 195109 TTTCCTGTCAAAGTTTTTACGA 195130
|| || || | || || ||||
Sbjct 2439 TTGCCGGTGAGGGTCTTGACGA 2460
>seq2637
Length=17558
Score = 95.1 bits (104), Expect = 3e-14
Identities = 190/279 (68%), Gaps = 2/279 (1%)
Strand=Plus/Minus
Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648
||||| ||| | |||| | ||||||| ||||||||| | || | | || | || |||
Sbjct 8369 TTCTATGCCTTGTGGATTCCCGATCTATTCATGAAGCGTGTCGAGAAGAACGCCGAGTGG 8310
Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708
| ||| | || |||||||| ||||| | | |||||| || ||| |||||||||
Sbjct 8309 ACTCTTATGTGCCCCAATGAGTGCCCTGGCTTGGCTGATGTCTACGGTGATGAGTTCGAG 8250
Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGG-AAGAGCCAAAAAGGTCGTGAAGGCCCAAGA 160767
|||| || || | ||||| || ||||| ||| | | || | | ||||| ||| |
Sbjct 8249 GCTCTGTACGAGAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACTA-TCAAGGCTCAAAA 8191
Query 160768 ACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAA 160827
|| ||| | |||||| | || ||| |||| || | || || || |||||
Sbjct 8190 GCTTTGGTACTCCATCCTCGAGGCTCAAACCGAGACCGGAAACCCATTCATGCTCTACAA 8131
Query 160828 GGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGG 160866
|||||| | || ||||| |||||||||||| ||||
Sbjct 8130 GGATGCATGCAACCGAAAGAGCAACCAGAAGAACCTTGG 8092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109433680449557
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |