Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2981 120 2e-21 seq3343 116 3e-20 seq3177 93.3 3e-13 >seq2981 Length=90661 Score = 120 bits (132), Expect = 2e-21 Identities = 315/476 (66%), Gaps = 6/476 (1%) Strand=Plus/Plus Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| |||||||| |||||||| ||| | || || || || | || | |||||||| Sbjct 26028 GAAATCATTGCCAACGATCAAGGCAACCGCACCACCCCCTCCTTCGTCGCCTTCACGGAT 26087 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 ||||| | | | | || ||||| || ||| |||||| | || || ||| | || ||| Sbjct 26088 ACTGAGCGTCTGATCGGAGATGCTGCGAAAAATCAAGTCGCTATGAACCCTGCGAACACT 26147 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAGA 550233 | || |||||||| ||| | || || | ||||| | || | |||||||| || Sbjct 26148 GTCTTCGATGCTAAGCGTCTTATCGGTCGCAAGTTCGCA-GACCCTGAGGTTCAGGCTGA 26206 Query 550234 TATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTAC 550293 ||||||||| | || ||| | | | || |||||| || |||| | | Sbjct 26207 TATGAAGCACTTCCCATTCAAGGTCCTCGATCGCGGTGGAAAGCCAGTCGTTGAGGTTGA 26266 Query 550294 --TCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 ||| | || | || ||||| | || || | || ||||| ||| | || | Sbjct 26267 GTTCAAGGGCGAGAAG--AAGCAATTCACTCCTGAGGAGATCTCATCGATGATCTTGGTC 26324 Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 || |||| | | || || || | ||||| | || | | || || | ||| Sbjct 26325 AAGATGAGAGAGACTGCTGAGGCCTACCTTGGTGGAACCGTCAACAACGCTGTCGTTACT 26384 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 || || || || || | |||||||||||||||||| || || || ||||| | |||||| Sbjct 26385 GTCCCTGCCTACTTCACTGACTCACAACGTCAAGCCACCAAGGACGCTGGCCTGATTGCT 26444 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || || ||||| || || |||||||| ||||| || || || |||| || || Sbjct 26445 GGCCTCAACGTTCTCCGAATCATCAATGAGCCTACCGCAGCCGCCATTGCCTACGG 26500 >seq3343 Length=27574 Score = 116 bits (128), Expect = 3e-20 Identities = 119/154 (77%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| ||||| || || || ||||| |||||||||||||| || || | Sbjct 18094 ATGCTGTTGTCACTGTCCCAGCCTACTTCAACGACTCGCAACGTCAAGCTACCAAGGACG 18035 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| | || ||||| ||||| ||||| ||| | |||| || ||||| |||||||| | Sbjct 18034 CTGGTCAAATCGCTGGTCTTAACGTTCTCCGTGTGGTCAACGAGCCTACCGCTGCTGCTC 17975 Query 550518 TTGCATATGGACTTGATAAACATAATGATCAAGA 550551 | |||||||| ||||| || || | || ||||| Sbjct 17974 TCGCATATGGCCTTGAGAAGGATGAGGA-CAAGA 17942 >seq3177 Length=131459 Score = 93.3 bits (102), Expect = 3e-13 Identities = 104/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 550379 GTTGGTCAAGAAGTTA-CGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437 ||||| ||||||| | | | || || || ||||| || ||||| || || ||| || Sbjct 116016 GTTGGGCAAGAAGGTCTCCAAGGCCGTTATCACTGTTCCCGCATACTTCAACGACAACCA 115957 Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497 ||||||||||| || ||||| || || ||||| || || ||||||||||| ||||| Sbjct 115956 GCGTCAAGCTACCAAGGATGCCGGTGCCATCGCTGGTCTCAACGTTCTTCGTATCATCAA 115897 Query 550498 TGAACCTACTGCTGCTGC 550515 || |||||||| ||||| Sbjct 115896 CGAGCCTACTGCCGCTGC 115879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029117726316790