Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq2981 120 2e-21
seq3343 116 3e-20
seq3177 93.3 3e-13
>seq2981
Length=90661
Score = 120 bits (132), Expect = 2e-21
Identities = 315/476 (66%), Gaps = 6/476 (1%)
Strand=Plus/Plus
Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114
||||| |||||||| |||||||| ||| | || || || || | || | ||||||||
Sbjct 26028 GAAATCATTGCCAACGATCAAGGCAACCGCACCACCCCCTCCTTCGTCGCCTTCACGGAT 26087
Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174
||||| | | | | || ||||| || ||| |||||| | || || ||| | || |||
Sbjct 26088 ACTGAGCGTCTGATCGGAGATGCTGCGAAAAATCAAGTCGCTATGAACCCTGCGAACACT 26147
Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAGA 550233
| || |||||||| ||| | || || | ||||| | || | |||||||| ||
Sbjct 26148 GTCTTCGATGCTAAGCGTCTTATCGGTCGCAAGTTCGCA-GACCCTGAGGTTCAGGCTGA 26206
Query 550234 TATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTAC 550293
||||||||| | || ||| | | | || |||||| || |||| | |
Sbjct 26207 TATGAAGCACTTCCCATTCAAGGTCCTCGATCGCGGTGGAAAGCCAGTCGTTGAGGTTGA 26266
Query 550294 --TCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351
||| | || | || ||||| | || || | || ||||| ||| | || |
Sbjct 26267 GTTCAAGGGCGAGAAG--AAGCAATTCACTCCTGAGGAGATCTCATCGATGATCTTGGTC 26324
Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411
|| |||| | | || || || | ||||| | || | | || || | |||
Sbjct 26325 AAGATGAGAGAGACTGCTGAGGCCTACCTTGGTGGAACCGTCAACAACGCTGTCGTTACT 26384
Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471
|| || || || || | |||||||||||||||||| || || || ||||| | ||||||
Sbjct 26385 GTCCCTGCCTACTTCACTGACTCACAACGTCAAGCCACCAAGGACGCTGGCCTGATTGCT 26444
Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
|| || || ||||| || || |||||||| ||||| || || || |||| || ||
Sbjct 26445 GGCCTCAACGTTCTCCGAATCATCAATGAGCCTACCGCAGCCGCCATTGCCTACGG 26500
>seq3343
Length=27574
Score = 116 bits (128), Expect = 3e-20
Identities = 119/154 (77%), Gaps = 1/154 (1%)
Strand=Plus/Minus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | ||||| ||||| || || || ||||| |||||||||||||| || || |
Sbjct 18094 ATGCTGTTGTCACTGTCCCAGCCTACTTCAACGACTCGCAACGTCAAGCTACCAAGGACG 18035
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
|||| | || ||||| ||||| ||||| ||| | |||| || ||||| |||||||| |
Sbjct 18034 CTGGTCAAATCGCTGGTCTTAACGTTCTCCGTGTGGTCAACGAGCCTACCGCTGCTGCTC 17975
Query 550518 TTGCATATGGACTTGATAAACATAATGATCAAGA 550551
| |||||||| ||||| || || | || |||||
Sbjct 17974 TCGCATATGGCCTTGAGAAGGATGAGGA-CAAGA 17942
>seq3177
Length=131459
Score = 93.3 bits (102), Expect = 3e-13
Identities = 104/138 (75%), Gaps = 1/138 (1%)
Strand=Plus/Minus
Query 550379 GTTGGTCAAGAAGTTA-CGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437
||||| ||||||| | | | || || || ||||| || ||||| || || ||| ||
Sbjct 116016 GTTGGGCAAGAAGGTCTCCAAGGCCGTTATCACTGTTCCCGCATACTTCAACGACAACCA 115957
Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497
||||||||||| || ||||| || || ||||| || || ||||||||||| |||||
Sbjct 115956 GCGTCAAGCTACCAAGGATGCCGGTGCCATCGCTGGTCTCAACGTTCTTCGTATCATCAA 115897
Query 550498 TGAACCTACTGCTGCTGC 550515
|| |||||||| |||||
Sbjct 115896 CGAGCCTACTGCCGCTGC 115879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029117726316790
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |