Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq332 93.3 3e-14
>seq332
Length=18159
Score = 93.3 bits (102), Expect = 3e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTT-CGATCGTCGTC 48616
||||| || || || ||| ||||| || |||||||| | | || | || | || ||
Sbjct 1806 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATC-GCTCAACGTACGGCCATCCTC 1864
Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676
|| ||||||||| ||||| ||||||||||| || || | || | |||||||| ||
Sbjct 1865 CAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGGTCAGGTGGGATTCCCTCCTTATCCTG 1924
Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736
||||||| || || | | | || || | ||| || |||| ||||| || ||
Sbjct 1925 AATCTTTGACTTGACGTTGTCAATCGTGTCCGAGGACTCGACTTCCAATGTAATAGTCTT 1984
Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||||||||| || ||||| || |||||
Sbjct 1985 GCCCGTCAAAGTCTTAACAAAGATTTGCAT 2014
Score = 84.2 bits (92), Expect = 2e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || ||| ||| || ||||| ||||| ||||| ||| | ||| |||| || | ||||
Sbjct 2551 TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCGTCCTCGAGCTGC 2610
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682
|| || || || ||||| || ||||| |||| |||| ||||||||||| ||||||
Sbjct 2611 TTGCCAGCGAAGATCAGGCGTTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTT 2669
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380921949535833
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |