Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq481 100 5e-16 >seq481 Length=22500 Score = 100 bits (110), Expect = 5e-16 Identities = 342/523 (65%), Gaps = 25/523 (5%) Strand=Plus/Plus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 |||||||| || || | ||||| |||||||| ||||| || | | |||||||||||| Sbjct 1866 TGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTCTCC 1925 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGG 47959 |||||| ||| ||||||| || || || | ||| ||| | | || ||| Sbjct 1926 ATGAAGTCGAATGGGTTGGTAACCTTGTAGACTT-TCTCATTGCCAAGGG--CGAGAAGG 1982 Query 47960 TGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 || || || ||| |||||||||||| ||| || | ||||||||| | || Sbjct 1983 AGACGATCAGCAACGAACTCGATGTATTGCTTCATCAGATTTGAGTTCATGCCGAGAAGA 2042 Query 48017 GACACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 | ||| | || ||||| || | || || | ||| || ||||| || | | Sbjct 2043 G-CACAAGGAAGAGCCTCAGTCAAGAATTCTTGCTCAATTGTGACGGCCTCAGTGATGAC 2101 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTG-TTGCGCAGGTGCTT------GGCATAGAGCA 48128 | ||| |||| | | ||| ||| || ||||||| || | | || | Sbjct 2102 AT-CTT------GGACG--GCTTGCTTGCTTGGGC-GGTGCTTCAAGTGGGAAAAAAGAA 2151 Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188 ||| || ||||| |||| | || || || ||| ||||||| | |||||||| | Sbjct 2152 GGCATGCGAAGTCGGTGTGAAGACCCTCATCACGGGAGATGAGCTCATTGGAGAAAGTAA 2211 Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248 | || | ||| | || | || || | ||| || || | |||||| || || ||||||| Sbjct 2212 GCCCGGCCATCAGACCACGCTTCTTCAACCAAAAGATGGACGCGAATGAACCGGAGAAGA 2271 Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308 |||| ||||| || || ||||| || || | | | || | || ||||||||| Sbjct 2272 AGATACCCTCAACAGCTGCGAATGCAACAAGACGTTGAGCAAAGGTAGACTTCTTGTCTT 2331 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||||| | |||||||| ||||||||||||||||| || Sbjct 2332 GAATCCATCTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 2374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931493547536640