Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq481 100 5e-16
>seq481
Length=22500
Score = 100 bits (110), Expect = 5e-16
Identities = 342/523 (65%), Gaps = 25/523 (5%)
Strand=Plus/Plus
Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899
|||||||| || || | ||||| |||||||| ||||| || | | ||||||||||||
Sbjct 1866 TGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTCTCC 1925
Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGG 47959
|||||| ||| ||||||| || || || | ||| ||| | | || |||
Sbjct 1926 ATGAAGTCGAATGGGTTGGTAACCTTGTAGACTT-TCTCATTGCCAAGGG--CGAGAAGG 1982
Query 47960 TGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016
|| || || ||| |||||||||||| ||| || | ||||||||| | ||
Sbjct 1983 AGACGATCAGCAACGAACTCGATGTATTGCTTCATCAGATTTGAGTTCATGCCGAGAAGA 2042
Query 48017 GACACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075
| ||| | || ||||| || | || || | ||| || ||||| || | |
Sbjct 2043 G-CACAAGGAAGAGCCTCAGTCAAGAATTCTTGCTCAATTGTGACGGCCTCAGTGATGAC 2101
Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTG-TTGCGCAGGTGCTT------GGCATAGAGCA 48128
| ||| |||| | | ||| ||| || ||||||| || | | || |
Sbjct 2102 AT-CTT------GGACG--GCTTGCTTGCTTGGGC-GGTGCTTCAAGTGGGAAAAAAGAA 2151
Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188
||| || ||||| |||| | || || || ||| ||||||| | |||||||| |
Sbjct 2152 GGCATGCGAAGTCGGTGTGAAGACCCTCATCACGGGAGATGAGCTCATTGGAGAAAGTAA 2211
Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248
| || | ||| | || | || || | ||| || || | |||||| || || |||||||
Sbjct 2212 GCCCGGCCATCAGACCACGCTTCTTCAACCAAAAGATGGACGCGAATGAACCGGAGAAGA 2271
Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308
|||| ||||| || || ||||| || || | | | || | || |||||||||
Sbjct 2272 AGATACCCTCAACAGCTGCGAATGCAACAAGACGTTGAGCAAAGGTAGACTTCTTGTCTT 2331
Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351
||||| | |||||||| ||||||||||||||||| ||
Sbjct 2332 GAATCCATCTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 2374
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931493547536640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |