Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2637 132 9e-26 seq481 89.7 1e-12 >seq2637 Length=17558 Score = 132 bits (146), Expect = 9e-26 Identities = 371/558 (66%), Gaps = 10/558 (2%) Strand=Plus/Plus Query 221942 GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGA 222001 ||| ||||| | | |||| |||||||| | || ||| ||| || ||| ||| Sbjct 8241 GTACAGAGCCT--CGAACTCATCACCGTAGACATCAGCCAAGCCAGGGCACTCATTGGGG 8298 Query 222002 CACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCAC 222061 ||||| ||| |||| | ||| | | ||| | || |||||| || || || |||||| Sbjct 8299 CACATAAGAGTCCACTCGGCGTTCTTCTCGACACGCTTCATGAATAGATCGGGAATCCAC 8358 Query 222062 AGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCC 222121 | || | |||||||| | | || |||||| ||||| ||| || | ||| || Sbjct 8359 AAGGCATAGAAGAGATCGCGAGCACGAACTTCCTCCTTGCCGTGGTTCTTTCGCAGGTCA 8418 Query 222122 AAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGC 222181 | |||| |||| || |||||||| ||||| || |||| || | ||| || || ||| Sbjct 8419 AGGTACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATAGCGAAAGCACCTGGGCGC 8478 Query 222182 TTGTTGCCACCCTGATCCACCATCCTCT-CCAGAG-CGTTGAAGATGCGAAGGGTCGGTA 222239 |||||||||||||| | || ||| ||| ||| | |||||||| || | | || | Sbjct 8479 TTGTTGCCACCCTGGT-CAACAT-ATCTAGCAGTGTTGTTGAAGACTCGCAACATGGGAA 8536 Query 222240 CCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC 222299 | | ||||||||| |||||||| || ||||| ||||| ||| | | | Sbjct 8537 CAATTCCGTTGGAGTTTCCGTTGGTACCAGCGATGTAGGCACCAGTGGCAC-GAATTCTG 8595 Query 222300 TGGCAG-ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358 ||| | | || ||||| || || | || || |||||||| ||| |||||| ||| Sbjct 8596 TGGATGTTTAGACCAATACCTCCCGCATTCTTGGAAATCATGGCACAGGCCTTGAGGGTG 8655 Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418 || |||||| || || || ||||| | || | || || || || || | |||| Sbjct 8656 TCGTAGATGCCGTCAATGCTATCTTCCTTCATGTCGACAAGGAAGCATGAAGAAAGCTGA 8715 Query 222419 G-ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGA 222477 | | ||| | | || ||| ||| || ||||| || || || ||||| || || Sbjct 8716 GCCTGTGGCGTACCA-GCGGCAAAGAGTGTGGGTGATGCATGAGTGAAGTACTTGCTTGA 8774 Query 222478 CATCAGATCGTACGTCTC 222495 ||||| | ||| ||||| Sbjct 8775 CATCAAGTTGTATGTCTC 8792 >seq481 Length=22500 Score = 89.7 bits (98), Expect = 1e-12 Identities = 160/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | || ||||||||| || |||||||||||| Sbjct 2766 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCTTTCTGGACCGCAGAGGAGATTGATCTG 2707 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT-- 25594 | ||||| | ||| |||| || | ||| ||||| ||| || ||| | Sbjct 2706 TCTAAGGATCTTCACGACTGGAACAACAGACTCAATGACGACGAGCGTTACTTCATTTCC 2647 Query 25595 -ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | |||||||| || || || || || || || |||||||| || |||| | Sbjct 2646 CACGTTCTTGCATTCTTCGCTGCATCCGACGGAATCGTCAACGAGAACCTTGTCGAGCGC 2587 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | | ||||| ||| | ||||| || |||||||| ||||| || Sbjct 2586 TTCAGCGGTGAAGTCCAGATCCCAGAGGCACGATGCTTCTACGGATTCCAAAT 2534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928805660802240