Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq332 105 4e-17
>seq332
Length=18159
Score = 105 bits (116), Expect = 4e-17
Identities = 115/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
||| |||||||||||||| |||||||| ||||| || ||||| || ||||| || |||||
Sbjct 2087 ATCCTCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTT 2146
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
||||||||||| || || || || ||||| | | | |||||| || ||
Sbjct 2147 ATCTTGAATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCAACTTCAAGAGTGAT 2206
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||| || |||||||| ||||| ||||| || ||
Sbjct 2207 AGTCTTGCCGGTGAGGGTCTTGACGAAGATCTG 2239
Score = 104 bits (114), Expect = 2e-16
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| |||||||| || |||||||| || || || | ||||| || | || ||
Sbjct 2249 ACGGAGACGGAGAACGAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGT 2308
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | || ||||||||||| || || ||||| | |||||| || ||||||||||| ||
Sbjct 2309 GCGGCCGTCCTCAAGTTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATGCC 2368
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
|||||||| |||||||| || ||| || || ||||| || | |||||
Sbjct 2369 CTCCTTGTCCTGAATCTTGGACTTAACATTGTCGATGGTATCGCTGGACTCAACCTCAAG 2428
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762
||| || || || |||||||| ||||| ||||
Sbjct 2429 GGTGATGGTCTTGCCGGTGAGGGTCTTGACGA 2460
Score = 87.8 bits (96), Expect = 1e-11
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||||||||| ||||| ||||| || || || || || || |||| |||||
Sbjct 2532 ACGAAGACGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGT 2591
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| || || || ||||| ||||| || || || |||||||| || |||||||| ||
Sbjct 2592 GCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCCGGAGGAATACC 2651
Query 480671 TTCCTTGTCTTGAATCTT 480688
|||||||| ||||||||
Sbjct 2652 CTCCTTGTCCTGAATCTT 2669
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268034601453908
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |