Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq332 105 4e-17 >seq332 Length=18159 Score = 105 bits (116), Expect = 4e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| |||||||||||||| |||||||| ||||| || ||||| || ||||| || ||||| Sbjct 2087 ATCCTCAAGTTGCTTTCCCGCAAAAATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTT 2146 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||||||||||| || || || || ||||| | | | |||||| || || Sbjct 2147 ATCTTGAATCTTCGACTTAACGTTGTCGATGGTATCTGAGGACTCAACTTCAAGAGTGAT 2206 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || |||||||| ||||| ||||| || || Sbjct 2207 AGTCTTGCCGGTGAGGGTCTTGACGAAGATCTG 2239 Score = 104 bits (114), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || |||||||| || || || | ||||| || | || || Sbjct 2249 ACGGAGACGGAGAACGAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGT 2308 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | || ||||||||||| || || ||||| | |||||| || ||||||||||| || Sbjct 2309 GCGGCCGTCCTCAAGTTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATGCC 2368 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||| |||||||| || ||| || || ||||| || | ||||| Sbjct 2369 CTCCTTGTCCTGAATCTTGGACTTAACATTGTCGATGGTATCGCTGGACTCAACCTCAAG 2428 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 ||| || || || |||||||| ||||| |||| Sbjct 2429 GGTGATGGTCTTGCCGGTGAGGGTCTTGACGA 2460 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| ||||| ||||| || || || || || || |||| ||||| Sbjct 2532 ACGAAGACGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGT 2591 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || || || ||||| ||||| || || || |||||||| || |||||||| || Sbjct 2592 GCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCCGGAGGAATACC 2651 Query 480671 TTCCTTGTCTTGAATCTT 480688 |||||||| |||||||| Sbjct 2652 CTCCTTGTCCTGAATCTT 2669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268034601453908