Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1697 111 2e-19 >seq1697 Length=38374 Score = 111 bits (122), Expect = 2e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||||||||||| || |||||||| |||||||| ||||| || |||||||||||||| || Sbjct 31601 ACACCAATAGGGCCCACGCCAGGTCCTCCACCACCATGAGGGATACAGAATGTCTTGTGC 31542 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 ||||| ||||| || ||||| |||||| || | ||| || || | |||||| Sbjct 31541 AAATTGAGATGGCAGACATCAGCACCAATCTCTCCGGGTGAGCACAGTCCGATTTGTGCA 31482 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACA 138358 || | || || ||||| | || || || || || | ||||| |||| ||||| Sbjct 31481 TTCATGTTGGCGCCATCCATGTAGACTTGGCCTCCGTGCTCATGGACGAGGTTACA 31426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578974002454920