Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq2637 197 2e-45
seq481 129 7e-25
seq1553 82.4 9e-11
>seq2637
Length=17558
Score = 197 bits (218), Expect = 2e-45
Identities = 1166/1832 (64%), Gaps = 69/1832 (4%)
Strand=Plus/Minus
Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204
|| ||||| |||| ||||||||| || | ||||| | || |||||||||| |
Sbjct 8921 TATTTTGGATTCAAGACCCTTGAGC-GATCATATCTCCTCCGTCTCGATGGCAAGATTGC 8863
Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264
|| ||| || | ||| | ||||| || || | ||||||||||| || || || ||
Sbjct 8862 TGAGCGCCCTCAACATATGATTATGCGCGTGGCGGTTGGCATCCACGGTGAGGATATCGA 8803
Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTC--CCAAGGTATGTTCATTCACGCAACACCA 75322
||| | ||||||||| || |||||| ||| ||| |||| ||| ||| ||||
Sbjct 8802 GGCTGCTATTGAGACATACAACTTGATGTCAAGCAA-GTA-CTTCACTCATGCATCACCC 8745
Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382
|| ||||| |||||||| ||| | ||| | || ||||||||| ||| ||
Sbjct 8744 ACACTCTTTGCCGCTGGTACGCCACAGGCTCAGCTTTCTTCATGCTTCCTTGTCGACATG 8685
Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442
||||| || || |||| ||||| | || || | || ||||| || || |||
Sbjct 8684 AAGGAAGATAGCATTGACGGCATCTACGACACCCTCAAGGCCTGTGCCATGATTTCCAAG 8625
Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502
|| || |||||||| | ||||||| | | |||| | | ||
Sbjct 8624 AATGCGGGAGGTATTGGTCTAAACATCCACAGAATTCGTGCCACTGGTGCCTACATCGCT 8565
Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562
|| || || || | || | || ||| |||| ||| | || || || ||| ||| ||
Sbjct 8564 GGTACCAACGGAAACTCCAACGGAATTGTTCCCATGTTGCGAGTCTTCAACAACACTGCT 8505
Query 75563 CGCTATGTAAATCAAGCGGGGC----GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACC 75618
| ||||| | | || | ||| ||| || | |||| ||||| | || ||
Sbjct 8504 AGATATGTTGA-CCAGGGTGGCAACAAGCGCCCAGGTGCTTTCGCTATCTACCTCGAGCC 8446
Query 75619 ATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGC 75678
|||||| |||||| | | |||| |||||| | ||| ||||| || | || || |
Sbjct 8445 ATGGCACGCCGATGTTTTCGAGTACCTTGACCTGCGAAAGAACCACGGCAAGGAGGAAGT 8386
Query 75679 TCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGA 75738
||| | | |||||||| | || |||||||||| || || ||||||||||| || ||
Sbjct 8385 TCGTGCTCGCGATCTCTTCTATGCCTTGTGGATTCCCGATCTATTCATGAAGCGTGTCGA 8326
Query 75739 GGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGT 75798
| || | | ||| ||||| | || || | || || || | | || |
Sbjct 8325 GAAGAACGCCGAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGCTTGGCTGATGTCTA 8266
Query 75799 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTA---GAGCCAATGC 75855
||||| ||||| || || || ||| ||||| || ||||||| | | |||
Sbjct 8265 CGGTGATGAGTTCGAGGCTCTGTACGAGAAGTACGAGAAGGAGGGCAAGGGTCGCAA--- 8209
Query 75856 GACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAA 75914
|||| | | || | | | | ||||| | | || ||| | | || || ||||| ||||
Sbjct 8208 GACTAT-CAAGGCTCAAAAGCTTTGGTACTCCATCCTCGAGGCTCAAACCGAGACCGGAA 8150
Query 75915 CACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAA 75974
|||| ||||| ||||||||||| || ||| ||||| ||||| ||||| | || |
Sbjct 8149 ACCCATTCATGCTCTACAAGGATGCATGCAACCGAAAGAGCAACCAGAAGAACCTTGGTA 8090
Query 75975 CAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGG 76034
| ||| ||||| || | ||||| |||||| | |||||| | || |||| |
Sbjct 8089 CTATCCGAAGCTCTAACTTGTGCACTGAAATTGTGGAGTACTCTTCGCCAGACGAGATTG 8030
Query 76035 CTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT--CAATGAAGAGACTCGCAC 76092
|||| ||||| ||||| || | || || || | ||||| ||||| | || ||||
Sbjct 8029 CTGTCTGCAACTTGGCCTCCCTTGCGCTCCCGACTTATGTTGACATGAACA-AC-GGCAC 7972
Query 76093 TTTTGATTATGAAAAACTTCATGAAATC-ACAAAGATTGTTACCAAAAATCTAAACCGAG 76151
| || | || || || || || || | ||| | ||| ||| || ||||| |
Sbjct 7971 ATACGACTTTGCCAAGCTCCACGAGGTCTGCCAAG-TCGTTGTCAAGAACTTAAACAAAA 7913
Query 76152 TCATTGACAGAAATTTTTATCCCGTT---GAGACTGCGCGA--AAGTCTAATATGCGACA 76206
|||| || | || | || || ||| ||| ||| || ||| || | || ||
Sbjct 7912 TCATCGATATCAACTACTACCCAGTTCCCGAG---GCGAGACGAAG--CAACTTTCGTCA 7858
Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACG- 76265
| |||| |||| | |||||||||||||| || |||| ||| || | || ||
Sbjct 7857 CCGACCCATTGCCGTTGGTGTTCAAGGTCTTGCAGATG-----CTTTCTTGGCACTCCGT 7803
Query 76266 ----CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTAT 76321
|||| || ||| ||| |||||| | | || | ||||| || ||||| ||
Sbjct 7802 CTTCCATTCGACTCACCTGAGGCCAAGCACCTCAACATCCAAATCTTCGAGACCATCTAC 7743
Query 76322 CACGCATCCCTGGAGGCGAGTTG--TGAATTGGCTGAAGCCCAAGGTTCCTATGAGACAT 76379
||||| | | | || || | | ||| | || | | | ||| | ||||||||||
Sbjct 7742 CACGC-TGCTTTGA-CCGCTTCGATTGAGCTTGCCAAGATCGATGGTCCTTATGAGACAT 7685
Query 76380 TTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGA--TATGTGGGAAGGTGAAAC 76437
|||||| ||||| || || | || | |||||| | ||| |||| || | | | |
Sbjct 7684 ATGAGGGCTCTCCGGCATCGAAGGGTGAGCTTCAATATGACCTATGGGGCA---TCACCC 7628
Query 76438 CAA--GCTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGT 76495
| | | || || ||||||||| | ||| ||| |||||| | | ||| | ||
Sbjct 7627 CCACCGATC-TCTGGGACTGGGATAGCTTGAAGCAACAGATCAAGCAACATGGTATCCGC 7569
Query 76496 AACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACA-AATCTTGGGTAATAA 76554
|||||| | | | || || |||||||| ||| |||| || | |||||| | ||
Sbjct 7568 AACAGTTTGCTTGTCGCTCCTATGCCAACTGCCAGCACCAGTCAGATTCTTGGCT-TCAA 7510
Query 76555 TGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTT 76614
|| |||||||| |||||||| | ||||| ||| | | || || || |||||
Sbjct 7509 CGAGTGCTTTGAGCCATACACTTCCAACATTTACTCTCGCCGTGTGCTTGCTGGCGAGTT 7450
Query 76615 TGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGA 76674
| |||||| | | || ||| | | || || |||||||| | |
Sbjct 7449 CCAGGTCGTCAACCCTTGGTTGTTGAAGGACTTGGTAGATATGGGCCTCTGGTCTGACAA 7390
Query 76675 TATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGA 76734
|||||| | | ||| | | || |||||||| || || || || | |||||||
Sbjct 7389 CATGAAGAACCGCATCATCGCTGATGGGGGTTCCATCCAGAACATTCCAAACATCCCAGC 7330
Query 76735 TGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGA--TGTCATTGAC 76792
||||||||| ||| ||| || || ||||| ||| | || || | | || |
Sbjct 7329 TGATATCAAAGCTCTGTACAAGACCGTTTGGGAGATC--TCTCAACGAACTATTGTTCAG 7272
Query 76793 ATGGCCGCAGATCGTGGTCGC-TTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATG 76849
||||| || || ||||| ||| | ||| |||||| || ||| ||||| | ||||
Sbjct 7271 ATGGCAGCCGACCGTGG-CGCATACATCGATCAA--TCCCAGTCGATGAACATCCACATG 7215
Query 76850 GAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTC 76909
| |||||| ||| |||| || | ||||| | | ||||| ||| |
Sbjct 7214 AAGGATCCAACCATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGTTGGGATTG 7155
Query 76910 AAAACCGGAATGTACTATCTCCGATCAAAGGC 76941
|| || || |||||||| ||||| ||| |||
Sbjct 7154 AAGACTGGCATGTACTACCTCCGTACAATGGC 7123
>seq481
Length=22500
Score = 129 bits (142), Expect = 7e-25
Identities = 161/217 (74%), Gaps = 8/217 (4%)
Strand=Plus/Minus
Query 65005 ACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAAG 65061
|| || || || || |||||||||| | ||||| | | |||| || |||| |||
Sbjct 2380 ACAGTTCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATTCAAGACAAGAAG 2321
Query 65062 TCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCC 65121
||| |||| || | || ||| |||| || || ||| ||||||||||||||||||
Sbjct 2320 TCTA---CCTTTGCTCAACGTCTTGTTGCATTCGCAGCTGTTGAGGGTATCTTCTTCTCC 2264
Query 65122 GGGTCATTCTGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTT 65180
|| |||||| ||| | || | ||||||||||||||| ||||| ||| | || || ||
Sbjct 2263 GGTTCATTC-GCGTCCATCTTTTGGTTGAAGAAGCGTGGTCTGATGGCCGGGCTTACTTT 2205
Query 65181 CTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217
||| ||||| || || ||||| ||||||||||| |||
Sbjct 2204 CTCCAATGAGCTCATCTCCCGTGATGAGGGTCTTCAC 2168
>seq1553
Length=189915
Score = 82.4 bits (90), Expect = 9e-11
Identities = 215/321 (67%), Gaps = 8/321 (2%)
Strand=Plus/Minus
Query 175192 GATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAAG 175251
||||| | || || |||| ||||| | ||| || ||| |||| | ||||| ||
Sbjct 21309 GATGTGGCTGGTATGGACGAAGCCAAGGCGGAAATTATGGAGTTTGTCCAATTTCTGAA- 21251
Query 175252 CAACCCGAGAGATATTTTGGAAGT--GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGG 175309
||| | |||| || | || ||||||||||| |||||||| || | || | |
Sbjct 21250 -AACTCCCGAGAAGTTCCAGCGGTTAGGTGCCAAGATTCCCCGAGGAGCTATCCTTTCTG 21192
Query 175310 GTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCC 175369
|| |||||||| || ||||| ||| | || || | || || || || | || |
Sbjct 21191 GTCCACCAGGTACAGGTAAGACTCTCTTAGCAAAGGCAACTGCTGGCGAGTCGCAAGTAC 21132
Query 175370 CATTCATCCAGTG-CTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAA 175428
| ||| || |||| | || | | || ||||||||||| |||||||| ||||| |
Sbjct 21131 CTTTCTTC-AGTGTCAGTGGTTCCGAGTTCGTGGAGATGTTCGTTGGTGTCGGTGCATCA 21073
Query 175429 AGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCA-ACCATGTATTGTCTTCATTGA 175487
|| || || ||||| || | || || | ||| | || |||||||| | ||||| ||
Sbjct 21072 AGAGTGCGAGATCTTTTCGCCATGGCGAG-GAAGAGCACGCCATGTATAATTTTCATCGA 21014
Query 175488 TGAGATTGATGCGGTGGGCAA 175508
||| || || || | |||||
Sbjct 21013 TGAAATCGACGCTATCGGCAA 20993
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596544462048480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |