Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2637 197 2e-45 seq481 129 7e-25 seq1553 82.4 9e-11 >seq2637 Length=17558 Score = 197 bits (218), Expect = 2e-45 Identities = 1166/1832 (64%), Gaps = 69/1832 (4%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 || ||||| |||| ||||||||| || | ||||| | || |||||||||| | Sbjct 8921 TATTTTGGATTCAAGACCCTTGAGC-GATCATATCTCCTCCGTCTCGATGGCAAGATTGC 8863 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 || ||| || | ||| | ||||| || || | ||||||||||| || || || || Sbjct 8862 TGAGCGCCCTCAACATATGATTATGCGCGTGGCGGTTGGCATCCACGGTGAGGATATCGA 8803 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTC--CCAAGGTATGTTCATTCACGCAACACCA 75322 ||| | ||||||||| || |||||| ||| ||| |||| ||| ||| |||| Sbjct 8802 GGCTGCTATTGAGACATACAACTTGATGTCAAGCAA-GTA-CTTCACTCATGCATCACCC 8745 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 || ||||| |||||||| ||| | ||| | || ||||||||| ||| || Sbjct 8744 ACACTCTTTGCCGCTGGTACGCCACAGGCTCAGCTTTCTTCATGCTTCCTTGTCGACATG 8685 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||| || || |||| ||||| | || || | || ||||| || || ||| Sbjct 8684 AAGGAAGATAGCATTGACGGCATCTACGACACCCTCAAGGCCTGTGCCATGATTTCCAAG 8625 Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502 || || |||||||| | ||||||| | | |||| | | || Sbjct 8624 AATGCGGGAGGTATTGGTCTAAACATCCACAGAATTCGTGCCACTGGTGCCTACATCGCT 8565 Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || || || || | || | || ||| |||| ||| | || || || ||| ||| || Sbjct 8564 GGTACCAACGGAAACTCCAACGGAATTGTTCCCATGTTGCGAGTCTTCAACAACACTGCT 8505 Query 75563 CGCTATGTAAATCAAGCGGGGC----GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACC 75618 | ||||| | | || | ||| ||| || | |||| ||||| | || || Sbjct 8504 AGATATGTTGA-CCAGGGTGGCAACAAGCGCCCAGGTGCTTTCGCTATCTACCTCGAGCC 8446 Query 75619 ATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGC 75678 |||||| |||||| | | |||| |||||| | ||| ||||| || | || || | Sbjct 8445 ATGGCACGCCGATGTTTTCGAGTACCTTGACCTGCGAAAGAACCACGGCAAGGAGGAAGT 8386 Query 75679 TCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGA 75738 ||| | | |||||||| | || |||||||||| || || ||||||||||| || || Sbjct 8385 TCGTGCTCGCGATCTCTTCTATGCCTTGTGGATTCCCGATCTATTCATGAAGCGTGTCGA 8326 Query 75739 GGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGT 75798 | || | | ||| ||||| | || || | || || || | | || | Sbjct 8325 GAAGAACGCCGAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGCTTGGCTGATGTCTA 8266 Query 75799 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTA---GAGCCAATGC 75855 ||||| ||||| || || || ||| ||||| || ||||||| | | ||| Sbjct 8265 CGGTGATGAGTTCGAGGCTCTGTACGAGAAGTACGAGAAGGAGGGCAAGGGTCGCAA--- 8209 Query 75856 GACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAA 75914 |||| | | || | | | | ||||| | | || ||| | | || || ||||| |||| Sbjct 8208 GACTAT-CAAGGCTCAAAAGCTTTGGTACTCCATCCTCGAGGCTCAAACCGAGACCGGAA 8150 Query 75915 CACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAA 75974 |||| ||||| ||||||||||| || ||| ||||| ||||| ||||| | || | Sbjct 8149 ACCCATTCATGCTCTACAAGGATGCATGCAACCGAAAGAGCAACCAGAAGAACCTTGGTA 8090 Query 75975 CAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGG 76034 | ||| ||||| || | ||||| |||||| | |||||| | || |||| | Sbjct 8089 CTATCCGAAGCTCTAACTTGTGCACTGAAATTGTGGAGTACTCTTCGCCAGACGAGATTG 8030 Query 76035 CTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT--CAATGAAGAGACTCGCAC 76092 |||| ||||| ||||| || | || || || | ||||| ||||| | || |||| Sbjct 8029 CTGTCTGCAACTTGGCCTCCCTTGCGCTCCCGACTTATGTTGACATGAACA-AC-GGCAC 7972 Query 76093 TTTTGATTATGAAAAACTTCATGAAATC-ACAAAGATTGTTACCAAAAATCTAAACCGAG 76151 | || | || || || || || || | ||| | ||| ||| || ||||| | Sbjct 7971 ATACGACTTTGCCAAGCTCCACGAGGTCTGCCAAG-TCGTTGTCAAGAACTTAAACAAAA 7913 Query 76152 TCATTGACAGAAATTTTTATCCCGTT---GAGACTGCGCGA--AAGTCTAATATGCGACA 76206 |||| || | || | || || ||| ||| ||| || ||| || | || || Sbjct 7912 TCATCGATATCAACTACTACCCAGTTCCCGAG---GCGAGACGAAG--CAACTTTCGTCA 7858 Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACG- 76265 | |||| |||| | |||||||||||||| || |||| ||| || | || || Sbjct 7857 CCGACCCATTGCCGTTGGTGTTCAAGGTCTTGCAGATG-----CTTTCTTGGCACTCCGT 7803 Query 76266 ----CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTAT 76321 |||| || ||| ||| |||||| | | || | ||||| || ||||| || Sbjct 7802 CTTCCATTCGACTCACCTGAGGCCAAGCACCTCAACATCCAAATCTTCGAGACCATCTAC 7743 Query 76322 CACGCATCCCTGGAGGCGAGTTG--TGAATTGGCTGAAGCCCAAGGTTCCTATGAGACAT 76379 ||||| | | | || || | | ||| | || | | | ||| | |||||||||| Sbjct 7742 CACGC-TGCTTTGA-CCGCTTCGATTGAGCTTGCCAAGATCGATGGTCCTTATGAGACAT 7685 Query 76380 TTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGA--TATGTGGGAAGGTGAAAC 76437 |||||| ||||| || || | || | |||||| | ||| |||| || | | | | Sbjct 7684 ATGAGGGCTCTCCGGCATCGAAGGGTGAGCTTCAATATGACCTATGGGGCA---TCACCC 7628 Query 76438 CAA--GCTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGT 76495 | | | || || ||||||||| | ||| ||| |||||| | | ||| | || Sbjct 7627 CCACCGATC-TCTGGGACTGGGATAGCTTGAAGCAACAGATCAAGCAACATGGTATCCGC 7569 Query 76496 AACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACA-AATCTTGGGTAATAA 76554 |||||| | | | || || |||||||| ||| |||| || | |||||| | || Sbjct 7568 AACAGTTTGCTTGTCGCTCCTATGCCAACTGCCAGCACCAGTCAGATTCTTGGCT-TCAA 7510 Query 76555 TGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTT 76614 || |||||||| |||||||| | ||||| ||| | | || || || ||||| Sbjct 7509 CGAGTGCTTTGAGCCATACACTTCCAACATTTACTCTCGCCGTGTGCTTGCTGGCGAGTT 7450 Query 76615 TGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGA 76674 | |||||| | | || ||| | | || || |||||||| | | Sbjct 7449 CCAGGTCGTCAACCCTTGGTTGTTGAAGGACTTGGTAGATATGGGCCTCTGGTCTGACAA 7390 Query 76675 TATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGA 76734 |||||| | | ||| | | || |||||||| || || || || | ||||||| Sbjct 7389 CATGAAGAACCGCATCATCGCTGATGGGGGTTCCATCCAGAACATTCCAAACATCCCAGC 7330 Query 76735 TGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGA--TGTCATTGAC 76792 ||||||||| ||| ||| || || ||||| ||| | || || | | || | Sbjct 7329 TGATATCAAAGCTCTGTACAAGACCGTTTGGGAGATC--TCTCAACGAACTATTGTTCAG 7272 Query 76793 ATGGCCGCAGATCGTGGTCGC-TTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATG 76849 ||||| || || ||||| ||| | ||| |||||| || ||| ||||| | |||| Sbjct 7271 ATGGCAGCCGACCGTGG-CGCATACATCGATCAA--TCCCAGTCGATGAACATCCACATG 7215 Query 76850 GAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTC 76909 | |||||| ||| |||| || | ||||| | | ||||| ||| | Sbjct 7214 AAGGATCCAACCATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGTTGGGATTG 7155 Query 76910 AAAACCGGAATGTACTATCTCCGATCAAAGGC 76941 || || || |||||||| ||||| ||| ||| Sbjct 7154 AAGACTGGCATGTACTACCTCCGTACAATGGC 7123 >seq481 Length=22500 Score = 129 bits (142), Expect = 7e-25 Identities = 161/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 65005 ACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAAG 65061 || || || || || |||||||||| | ||||| | | |||| || |||| ||| Sbjct 2380 ACAGTTCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATTCAAGACAAGAAG 2321 Query 65062 TCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCC 65121 ||| |||| || | || ||| |||| || || ||| |||||||||||||||||| Sbjct 2320 TCTA---CCTTTGCTCAACGTCTTGTTGCATTCGCAGCTGTTGAGGGTATCTTCTTCTCC 2264 Query 65122 GGGTCATTCTGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTT 65180 || |||||| ||| | || | ||||||||||||||| ||||| ||| | || || || Sbjct 2263 GGTTCATTC-GCGTCCATCTTTTGGTTGAAGAAGCGTGGTCTGATGGCCGGGCTTACTTT 2205 Query 65181 CTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 ||| ||||| || || ||||| ||||||||||| ||| Sbjct 2204 CTCCAATGAGCTCATCTCCCGTGATGAGGGTCTTCAC 2168 >seq1553 Length=189915 Score = 82.4 bits (90), Expect = 9e-11 Identities = 215/321 (67%), Gaps = 8/321 (2%) Strand=Plus/Minus Query 175192 GATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAAG 175251 ||||| | || || |||| ||||| | ||| || ||| |||| | ||||| || Sbjct 21309 GATGTGGCTGGTATGGACGAAGCCAAGGCGGAAATTATGGAGTTTGTCCAATTTCTGAA- 21251 Query 175252 CAACCCGAGAGATATTTTGGAAGT--GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGG 175309 ||| | |||| || | || ||||||||||| |||||||| || | || | | Sbjct 21250 -AACTCCCGAGAAGTTCCAGCGGTTAGGTGCCAAGATTCCCCGAGGAGCTATCCTTTCTG 21192 Query 175310 GTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCC 175369 || |||||||| || ||||| ||| | || || | || || || || | || | Sbjct 21191 GTCCACCAGGTACAGGTAAGACTCTCTTAGCAAAGGCAACTGCTGGCGAGTCGCAAGTAC 21132 Query 175370 CATTCATCCAGTG-CTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAA 175428 | ||| || |||| | || | | || ||||||||||| |||||||| ||||| | Sbjct 21131 CTTTCTTC-AGTGTCAGTGGTTCCGAGTTCGTGGAGATGTTCGTTGGTGTCGGTGCATCA 21073 Query 175429 AGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCA-ACCATGTATTGTCTTCATTGA 175487 || || || ||||| || | || || | ||| | || |||||||| | ||||| || Sbjct 21072 AGAGTGCGAGATCTTTTCGCCATGGCGAG-GAAGAGCACGCCATGTATAATTTTCATCGA 21014 Query 175488 TGAGATTGATGCGGTGGGCAA 175508 ||| || || || | ||||| Sbjct 21013 TGAAATCGACGCTATCGGCAA 20993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596544462048480